Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12910 239 / 6e-76 SCPL20 serine carboxypeptidase-like 20 (.1) AT3G25420 224 / 3e-70 SCPL21 serine carboxypeptidase-like 21 (.1) AT3G12203 154 / 7e-44 SCPL17 serine carboxypeptidase-like 17 (.1) AT3G12220 154 / 9e-44 SCPL16 serine carboxypeptidase-like 16 (.1) AT1G73300 151 / 7e-43 SCPL2 serine carboxypeptidase-like 2 (.1) AT1G73280 151 / 1e-42 SCPL3 serine carboxypeptidase-like 3 (.1) AT1G73290 150 / 3e-42 SCPL5 serine carboxypeptidase-like 5 (.1) AT3G10450 149 / 4e-42 SCPL7 serine carboxypeptidase-like 7 (.1.2) AT1G73270 149 / 8e-42 SCPL6 serine carboxypeptidase-like 6 (.1) AT2G22980 148 / 8e-42 SCPL13 serine carboxypeptidase-like 13 (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020206 [exp] 420 / 2e-146 AT4G12910 603 / 0.0 serine carboxypeptidase-like 20 (.1) Lus10025859 [exp] 255 / 4e-82 AT4G12910 694 / 0.0 serine carboxypeptidase-like 20 (.1) Lus10038240 [exp] 248 / 3e-79 AT4G12910 689 / 0.0 serine carboxypeptidase-like 20 (.1) Lus10020387 [exp] 243 / 5e-74 AT4G12910 627 / 0.0 serine carboxypeptidase-like 20 (.1) Lus10026831 [exp] 225 / 3e-70 AT4G12910 596 / 0.0 serine carboxypeptidase-like 20 (.1) Lus10026830 [exp] 214 / 9e-66 AT4G12910 595 / 0.0 serine carboxypeptidase-like 20 (.1) Lus10009562 [exp] 185 / 3e-53 AT4G12910 617 / 0.0 serine carboxypeptidase-like 20 (.1) Lus10020207 [exp] 177 / 2e-52 AT4G12910 553 / 0.0 serine carboxypeptidase-like 20 (.1) Lus10018667 [exp] 159 / 6e-44 AT1G73280 478 / 2e-153 serine carboxypeptidase-like 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G177500 [exp] 254 / 9e-82 AT4G12910 743 / 0.0 serine carboxypeptidase-like 20 (.1) Potri.019G054300 [exp] 243 / 3e-77 AT4G12910 636 / 0.0 serine carboxypeptidase-like 20 (.1) Potri.001G290800 [exp] 155 / 2e-44 AT1G33540 404 / 6e-139 serine carboxypeptidase-like 18 (.1) Potri.001G291300 [exp] 154 / 2e-43 AT1G33540 434 / 9e-150 serine carboxypeptidase-like 18 (.1) Potri.013G124900 [exp] 152 / 5e-43 AT1G73280 513 / 0.0 serine carboxypeptidase-like 3 (.1) Potri.001G290900 [exp] 151 / 1e-42 AT1G33540 430 / 8e-148 serine carboxypeptidase-like 18 (.1) Potri.001G291800 [exp] 150 / 7e-42 AT1G73300 432 / 1e-148 serine carboxypeptidase-like 2 (.1) Potri.001G291700 [exp] 147 / 4e-41 AT1G33540 414 / 8e-142 serine carboxypeptidase-like 18 (.1) Potri.001G312800 [exp] 124 / 1e-32 AT1G33540 402 / 3e-137 serine carboxypeptidase-like 18 (.1) Potri.007G072300 [exp] 107 / 2e-26 AT5G08260 632 / 0.0 serine carboxypeptidase-like 35 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00450 [flax] [poplar] Peptidase_S10 Serine carboxypeptidase
Representative CDS sequence Show only first row Show all	>Lus10026828 pacid=23142868 polypeptide=Lus10026828 locus=Lus10026828.g ID=Lus10026828.BGIv1.0 annot-version=v1.0 ATGAATCTAGCTGGCTTCTTCACGCTGGTGATTTCAATGCACCAGCTGCTGCTATTTGTTGAAGCGGCTCCAAGACAAGCTCTCGTCACCTACCTTCCTG GCTTCAATGGCACTTTCCCCTCCAAACACAAACACTATTCTGGGTATGTAAGGCTGGGAGGCAGAACATCACCAGAACATATGTTTTACTACTTTGTTAC ATCGGAGAGGAATCCCTCCACTGACCCTGTCATGCTGTGGCTCAACGGCGGCCCTGGCTGCTCTAGTTTCGACGGGTTCGTCTACGAACATGGACCTTTC AAGTTCGAAGCCAATGGTGGGTTGCCAACGTTGCATCTCAACCCCTATGCATGGTCCAAGGTATCAAGCATGATATATCTGGATTCACCCGTTGGAGTTG GCTTCTCTTTCAAAGATAACACCACTACTTATTCCTCTACTGACACTCTAACTGCCTCCAGAACCCACAACTTCCTCCTCAAGGGATATACGATTGGGAA TGGGGTGACGGATGGGGAGTTCGATGGTAACGCTTTAGTTCCATTTGCGTATGGGATGGGTCTCATTTCCGATGAACTCTACCAGGGTGCTAATTCCGAA TGCAGAGGCAACTACGACAATCCTAATTCCCCTGTTACTTGCCATCAGAGACTTGACCAAATTGATGCCGTGCCTCTAACTGGTCTGAACATATATGACG TTCTGGAGCCCTGCTACCACAGCACAACAGACACAACAAGCAGGAGCAGCAGCAAAATTCCAAGGAGTTTCAGAGAGTGGGAAGAAGAACAGATGAAGAG GGGAGGTCGGTGCCGGTGA
AA sequence Show only first row Show all	>Lus10026828 pacid=23142868 polypeptide=Lus10026828 locus=Lus10026828.g ID=Lus10026828.BGIv1.0 annot-version=v1.0 MNLAGFFTLVISMHQLLLFVEAAPRQALVTYLPGFNGTFPSKHKHYSGYVRLGGRTSPEHMFYYFVTSERNPSTDPVMLWLNGGPGCSSFDGFVYEHGPF KFEANGGLPTLHLNPYAWSKVSSMIYLDSPVGVGFSFKDNTTTYSSTDTLTASRTHNFLLKGYTIGNGVTDGEFDGNALVPFAYGMGLISDELYQGANSE CRGNYDNPNSPVTCHQRLDQIDAVPLTGLNIYDVLEPCYHSTTDTTSRSSSKIPRSFREWEEEQMKRGGRCR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G12910		SCPL20	serine carboxypeptidase-like 2...		Lus10026828 [exp]	0	1
AT1G51760		JR3, IAR3	JASMONIC ACID RESPONSIVE 3, IA...		Lus10010715 [exp]	1.0	0.8939
AT3G53940			Mitochondrial substrate carrie...		Lus10012658 [exp]	3.2	0.8748
AT3G48010		ATCNGC16	cyclic nucleotide-gated channe...		Lus10002363 [exp]	4.9	0.7958
AT1G74150			Galactose oxidase/kelch repeat...		Lus10031420 [exp]	10.8	0.8268
AT1G54510		ATNEK1	NIMA-related serine/threonine ...		Lus10020244 [exp]	14.5	0.7675
AT1G02170		AtMCP1b, ATMC1,...	LSD ONE LIKE 3, ARABIDOPSIS TH...		Lus10035628 [exp]	16.9	0.8189
AT5G44440			FAD-binding Berberine family p...		Lus10003646 [exp]	20.1	0.7488
AT5G50920		CLPC1, CLPC, AT...	HEAT SHOCK PROTEIN 93-V, DE-RE...		Lus10025832 [exp]	20.2	0.7868
AT5G15100		ATPIN8, PIN8	PIN-FORMED 8, Auxin efflux car...		Lus10013422 [exp]	23.5	0.7592
AT2G30900		TBL43	TRICHOME BIREFRINGENCE-LIKE 43...		Lus10007367 [exp]	25.3	0.7988

Compare expression of checked genes

Lus10026828 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.