Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38380 536 / 0 MATE efflux family protein (.1) AT2G38330 366 / 7e-121 MATE efflux family protein (.1) AT3G08040 301 / 1e-95 ATFRD3, MAN1, FRD3 MANGANESE ACCUMULATOR 1, FERRIC REDUCTASE DEFECTIVE 3, MATE efflux family protein (.1.2) AT1G51340 296 / 6e-94 MATE efflux family protein (.1.2) AT2G21340 72 / 3e-13 MATE efflux family protein (.1.2) AT4G39030 65 / 7e-11 SCORD3, SID1, EDS5 SALICYLIC ACID INDUCTION DEFICIENT 1, susceptible to coronatine-deficient Pst DC3000 3, ENHANCED DISEASE SUSCEPTIBILITY 5, MATE efflux family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023943 [exp] 903 / 0 AT4G38380 593 / 0.0 MATE efflux family protein (.1) Lus10014440 [exp] 812 / 0 AT4G38380 527 / 0.0 MATE efflux family protein (.1) Lus10014441 [exp] 761 / 0 AT4G38380 501 / 2e-167 MATE efflux family protein (.1) Lus10020203 [exp] 439 / 1e-152 AT4G38380 174 / 3e-50 MATE efflux family protein (.1) Lus10012227 [exp] 363 / 6e-119 AT2G38330 608 / 0.0 MATE efflux family protein (.1) Lus10039609 [exp] 314 / 2e-100 AT3G08040 619 / 0.0 MANGANESE ACCUMULATOR 1, FERRIC REDUCTASE DEFECTIVE 3, MATE efflux family protein (.1.2) Lus10029517 [exp] 315 / 1e-99 AT3G08040 596 / 0.0 MANGANESE ACCUMULATOR 1, FERRIC REDUCTASE DEFECTIVE 3, MATE efflux family protein (.1.2) Lus10026303 [exp] 291 / 6e-92 AT1G51340 564 / 0.0 MATE efflux family protein (.1.2) Lus10016412 [exp] 291 / 1e-91 AT1G51340 569 / 0.0 MATE efflux family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G143400 [exp] 646 / 0 AT4G38380 626 / 0.0 MATE efflux family protein (.1) Potri.004G183600 [exp] 640 / 0 AT4G38380 604 / 0.0 MATE efflux family protein (.1) Potri.005G102800 [exp] 523 / 0 AT4G38380 547 / 0.0 MATE efflux family protein (.1) Potri.016G126000 [exp] 356 / 2e-116 AT2G38330 499 / 9e-173 MATE efflux family protein (.1) Potri.016G053600 [exp] 309 / 5e-99 AT1G51340 543 / 0.0 MATE efflux family protein (.1.2) Potri.001G266900 [exp] 310 / 9e-99 AT3G08040 598 / 0.0 MANGANESE ACCUMULATOR 1, FERRIC REDUCTASE DEFECTIVE 3, MATE efflux family protein (.1.2) Potri.009G053700 [exp] 306 / 1e-97 AT1G51340 634 / 0.0 MATE efflux family protein (.1.2) Potri.009G061100 [exp] 300 / 4e-95 AT3G08040 566 / 0.0 MANGANESE ACCUMULATOR 1, FERRIC REDUCTASE DEFECTIVE 3, MATE efflux family protein (.1.2) Potri.009G122900 [exp] 85 / 4e-17 AT2G21340 684 / 0.0 MATE efflux family protein (.1.2) Potri.009G122600 [exp] 75 / 6e-14 AT2G21340 646 / 0.0 MATE efflux family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0222 [flax] [poplar] MviN_MATE PF01554 [flax] [poplar] MatE MatE
Representative CDS sequence Show only first row Show all	>Lus10026829 pacid=23142944 polypeptide=Lus10026829 locus=Lus10026829.g ID=Lus10026829.BGIv1.0 annot-version=v1.0 ATGAGTACTACTAGGCAGTTTGGAGGAGGTACGCTTTCTAGAGCAGTGACAGGTAGAACAAAACTTACGAAGAGCTCGTCTTTGTGGGCTTTCCATAGTC GATTTGCCAAAGGGTTTCGGTGGAGCGATAATACTACGCGAAATTACTTGTCTGCCGAGTACAGAGATCGATTGTCACGAGTGTTGACTCGTCGTAAGAG GCGCGATTCGGTGGTGCTTTATAATCAGTTAGCTTCCGGCTATGGGGTTGATTCTGCTGATGTAGAGGAGAGTTTGGAGTTGGAAGAAGGAGGTATTGCC ACCAATGGTTCTGCTCATGAGAAATCTGAGGCTATAGGGGTTCCGGTTGAGAAGAAACCTCATCCAGCGAATGTTAAACACGAGCTGGCTATGCTGACAT TGCCTGCGATTGGGGTATACGCAATCGACCATTTTGCGCAACTAATGGAGACTGTCTTTATTGGTAGAATAGGTTCGATCGAGCTGGGCTCAGCTGGTGT TGCTACTATGATCTTCAACAATGTTTCCATGCTACTCAACATTCCTCTTCTAAGTGTTTCTACTTCTTTTGTTGCTGAGGACATTGCGAAACATGCAGCT GAAGAAGACCATACTAATGGCGGACTAACCAATAAGGTGGTGAAGAGGAAGCAACTGGCTTCAGTGTCTGCAACATTACTGCTAGCCATTGGAATAGGAA TCTTTGAGGCGACAGTTTTGTCGTTCGGACGTGGTCCATTTCTTGGCTTGATGGGTGTAACACCGGGAACATCAATGCGAATCCCAGCAGACAGATATCT TTCAGTGAAGGCACTAGGTGCTCCTGCTGTTGTAATATTGTTGGCTCTTCAAGGCATATTCAGCGGCTTCAAAGATACCAAGACTCCTCTTCTTTGCATG GGTCTTGGTAATTTGTCATTAGTGTTTCTGTTTCCTTTGCTGATGTATGAGCTTAAGTTAGGCGTCACTGGCGCAGCACTCGCAATCGTTCTGTCTCAAT ATCTTGTGACCCTTTTAATGCTGAGGAATCTCAATAAGAAGGTTATACTACTGCCTCCGAGGATCGTCGATTTACAATTCGGTGTCTATATGAAGTCTGG TGGTTTCCTTATTGGGAGAACTCTGGCTGATATGATAACCATGACCTTGGCCACATCCATGGCTGCTCATCAAGGAACAATGGCCATGGCAGGGCATCAA ATATGCATACAAGTTTGGTCGGCTGTTTCTCTACTTACCGGTGCAGTGGCTTTTTCTGCTCAGGTTATGGTTGCAAGTTATTCATCAAAACGCGATTATG TGAATGCAAGAGAAGTCACAAACTTGGTGTTGAAGGTTGGCTTATTTACAGGCCTTGCATTGGCCGCCATACTCGGCTTATCATTCGGTTCCATAGCCAA GTTGTTCACTGCAGATGCTGAATTACTACAGGTCATAAACACCGGTGTATTGTTTGTTTGCGCCAGTCAACCTTTGGACGCTCTAGCTTACATCTTCGAT GGCCTCCACTTTGGCGTCTCTGACTTCCCATATGCAGCCTGCTCGATGATGATGGTTGGAGCCATATGTTCAGTGTTTCTACTCTATGTCCCTCGACATC TCGGGCTTCATGGTGTTTGGTCAGGCTTGGCTCTCTTCACGGCCCTACGAACTTTTGCTGGGATTGTAAGGTAG
AA sequence Show only first row Show all	>Lus10026829 pacid=23142944 polypeptide=Lus10026829 locus=Lus10026829.g ID=Lus10026829.BGIv1.0 annot-version=v1.0 MSTTRQFGGGTLSRAVTGRTKLTKSSSLWAFHSRFAKGFRWSDNTTRNYLSAEYRDRLSRVLTRRKRRDSVVLYNQLASGYGVDSADVEESLELEEGGIA TNGSAHEKSEAIGVPVEKKPHPANVKHELAMLTLPAIGVYAIDHFAQLMETVFIGRIGSIELGSAGVATMIFNNVSMLLNIPLLSVSTSFVAEDIAKHAA EEDHTNGGLTNKVVKRKQLASVSATLLLAIGIGIFEATVLSFGRGPFLGLMGVTPGTSMRIPADRYLSVKALGAPAVVILLALQGIFSGFKDTKTPLLCM GLGNLSLVFLFPLLMYELKLGVTGAALAIVLSQYLVTLLMLRNLNKKVILLPPRIVDLQFGVYMKSGGFLIGRTLADMITMTLATSMAAHQGTMAMAGHQ ICIQVWSAVSLLTGAVAFSAQVMVASYSSKRDYVNAREVTNLVLKVGLFTGLALAAILGLSFGSIAKLFTADAELLQVINTGVLFVCASQPLDALAYIFD GLHFGVSDFPYAACSMMMVGAICSVFLLYVPRHLGLHGVWSGLALFTALRTFAGIVR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G38380			MATE efflux family protein (.1...		Lus10026829 [exp]	0	1
AT1G61290		ATSYP124, SYP12...	syntaxin of plants 124 (.1)		Lus10011244 [exp]	5.2	0.8676
AT5G53110			RING/U-box superfamily protein...		Lus10010123 [exp]	6.9	0.8001
AT4G26110		NAP1;1, ATNAP1;...	ARABIDOPSIS THALIANA NUCLEOSOM...		Lus10026197 [exp]	12.2	0.8639
AT3G61230	LIM	PLIM2c	PLIM2c, GATA type zinc finger ...		Lus10029859 [exp]	14.7	0.8587
AT5G42120			Concanavalin A-like lectin pro...		Lus10029769 [exp]	17.0	0.8327
AT1G29670			GDSL-like Lipase/Acylhydrolase...		Lus10002775 [exp]	19.0	0.8585
AT3G56570			SET domain-containing protein ...		Lus10029539 [exp]	22.6	0.8568
AT2G33530		SCPL46	serine carboxypeptidase-like 4...		Lus10040326 [exp]	24.7	0.8579
					Lus10032472 [exp]	25.1	0.8546
AT1G24540		CYP86C1	"cytochrome P450, family 86, s...		Lus10006232 [exp]	27.7	0.8544

Compare expression of checked genes

Lus10026829 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.