Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12910 596 / 0 SCPL20 serine carboxypeptidase-like 20 (.1) AT3G25420 593 / 0 SCPL21 serine carboxypeptidase-like 21 (.1) AT5G09640 286 / 4e-91 SNG2, SCPL19 SINAPOYLGLUCOSE ACCUMULATOR 2, serine carboxypeptidase-like 19 (.1) AT1G33540 254 / 8e-79 SCPL18 serine carboxypeptidase-like 18 (.1) AT2G22970 247 / 3e-76 SCPL11 serine carboxypeptidase-like 11 (.1.2.3) AT5G23210 248 / 4e-76 SCPL34 serine carboxypeptidase-like 34 (.1.2.3.4) AT5G08260 235 / 3e-71 SCPL35 serine carboxypeptidase-like 35 (.1) AT4G30810 234 / 8e-71 SCPL29 serine carboxypeptidase-like 29 (.1) AT4G15100 233 / 4e-70 SCPL30 serine carboxypeptidase-like 30 (.1) AT2G35780 228 / 7e-69 SCPL26 serine carboxypeptidase-like 26 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020207 [exp] 915 / 0 AT4G12910 553 / 0.0 serine carboxypeptidase-like 20 (.1) Lus10026831 [exp] 839 / 0 AT4G12910 596 / 0.0 serine carboxypeptidase-like 20 (.1) Lus10025859 [exp] 582 / 0 AT4G12910 694 / 0.0 serine carboxypeptidase-like 20 (.1) Lus10038240 [exp] 575 / 0 AT4G12910 689 / 0.0 serine carboxypeptidase-like 20 (.1) Lus10020206 [exp] 565 / 0 AT4G12910 603 / 0.0 serine carboxypeptidase-like 20 (.1) Lus10020387 [exp] 553 / 0 AT4G12910 627 / 0.0 serine carboxypeptidase-like 20 (.1) Lus10009562 [exp] 542 / 0 AT4G12910 617 / 0.0 serine carboxypeptidase-like 20 (.1) Lus10007731 [exp] 299 / 1e-95 AT5G09640 504 / 4e-177 SINAPOYLGLUCOSE ACCUMULATOR 2, serine carboxypeptidase-like 19 (.1) Lus10018667 [exp] 295 / 2e-87 AT1G73280 478 / 2e-153 serine carboxypeptidase-like 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G054300 [exp] 689 / 0 AT4G12910 636 / 0.0 serine carboxypeptidase-like 20 (.1) Potri.014G177500 [exp] 611 / 0 AT4G12910 743 / 0.0 serine carboxypeptidase-like 20 (.1) Potri.001G291300 [exp] 305 / 3e-98 AT1G33540 434 / 9e-150 serine carboxypeptidase-like 18 (.1) Potri.001G290900 [exp] 298 / 2e-95 AT1G33540 430 / 8e-148 serine carboxypeptidase-like 18 (.1) Potri.001G291800 [exp] 295 / 4e-94 AT1G73300 432 / 1e-148 serine carboxypeptidase-like 2 (.1) Potri.013G124900 [exp] 290 / 2e-92 AT1G73280 513 / 0.0 serine carboxypeptidase-like 3 (.1) Potri.001G291700 [exp] 277 / 3e-87 AT1G33540 414 / 8e-142 serine carboxypeptidase-like 18 (.1) Potri.001G290800 [exp] 273 / 1e-86 AT1G33540 404 / 6e-139 serine carboxypeptidase-like 18 (.1) Potri.007G072300 [exp] 256 / 4e-79 AT5G08260 632 / 0.0 serine carboxypeptidase-like 35 (.1) Potri.001G312800 [exp] 255 / 5e-79 AT1G33540 402 / 3e-137 serine carboxypeptidase-like 18 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00450 [flax] [poplar] Peptidase_S10 Serine carboxypeptidase
Representative CDS sequence Show only first row Show all	>Lus10026830 pacid=23142873 polypeptide=Lus10026830 locus=Lus10026830.g ID=Lus10026830.BGIv1.0 annot-version=v1.0 ATGGCTGCTAAATCATCACGGTTGTTTGAGCTGATCATATCCTTGGCGGCGGTTATTATTATGAGTTGTTGTCGGATTACTGAAGCAGCTCCGGCGGCCT CGCTGGTTACTCACTTGCCCGGTTTCAACGGAACTTTCCCCTCCCAACATTACTCAGGGCAAGTCATCTTCATCTCAACTTTTTCTTACCAAATAGGGGT TGTGATCGAGCGGTATGTGAGTTTGGAGAATGAGAAGAATATGTTTTACTACTTCATAGAGTCGGAGAGAAACTCCAAGGCGGATCCAGTTGTGTTGTGG CTCAACGGCGGACCTGGCTGCTCCAGTTTTGATGGCTTTGTTTATGAACATGGGCCATTCAACTTTGAAAAAGGGCAGAGCAAAGCAAGTCTTCCCAAAT TGCATCTTAATCCATACAGCTGGTCTAAGGTTTCCAACATTATCTATTTGGACTCACCTTGTGGAGTTGGACTTTCCTACTCCCCAAATGCTTCCAATTA TCAAACTGATGATCGCCAAACCGCCTTTGATTCCCACAATTTCCTTCTCAAGTGGTTTGAACTGTATCCAGAATTCCAGCAAAATCCCTTTTACATCTCG GGAGAGTCCTACGCTGGCATTTATGTCCCCACTCTCTCAGCTCAAGTCGTTCAAGGAATAAAAACAGGAGAAAAGCCTACCATCAACTTCAAGGGTTACC TTGTTGGGAATGGAGTGGCCAACGACGAAAAGACTAGTGGGCTTGGTGCATTTGTCCATTTTGTACATGGAATGGCTCTTATTTCCGACAAAATGTTTCA GCAAGCAGCTGGTGCTTGTAAGCCCGATTTCAGTGGCCGAAGTCAGAAATGCGCTGACAGCATTGGCAAAATTGACAAGGCAGTGGACCTATTGAATATT TATGACGTGCTGGAGCCATGCTACCATGACCCAGAAGGCCAACGGCAGAAGCAGCCCAAATTACCCACCAGCTTTCAGGAATTGGGCCAGACTGATAGGC CTCTCCAAGTCAGGAAGCGGATGTTTGGACGGGCCTGGCCTCTTTGGGCTGACCACTTCCAAAATTTCCGTCAAAATTCTTCTTCTGCTACTACTGATTA TAGTATGCCTCTTTGGCCCCAACTCGCCCAGAAAGCCGGCGGCGTTATGTGCGTGAATGATGAAGTTGCAACCGCTTGGCTGAACGATGAAACAGTACGG AAGGCTCTCCATGCCCAACCGGTATCCGTCGCGGGTCCGTGGGAGTTGTGTTCGGACAGAATATCATATGGATTTGGAGCAGGGGACATGGTTCCGATCC ATAAAAATCTAACCACGCAAGGATATCGAGCCCTTATTTATAGCGGAGACCACGATATGTGTGTACCATACACCGGGACGGAAGCTTGGACCAGCTCACT TGGTTACAATGTCATCGACGAATGGAGGCCATGGATCTCCGGCGATGACAATCAAGTTGCTGGATACTTGGAAGGATATGAGCATAACCTCACATTTCTC ACAATTAAGGGGGCAGGGCATACGGTACCAGAGTACAAGCCACGTGAATCTCTGGATTTTTTCACTCGATTTCTCGACGCCAAATCGATATGA
AA sequence Show only first row Show all	>Lus10026830 pacid=23142873 polypeptide=Lus10026830 locus=Lus10026830.g ID=Lus10026830.BGIv1.0 annot-version=v1.0 MAAKSSRLFELIISLAAVIIMSCCRITEAAPAASLVTHLPGFNGTFPSQHYSGQVIFISTFSYQIGVVIERYVSLENEKNMFYYFIESERNSKADPVVLW LNGGPGCSSFDGFVYEHGPFNFEKGQSKASLPKLHLNPYSWSKVSNIIYLDSPCGVGLSYSPNASNYQTDDRQTAFDSHNFLLKWFELYPEFQQNPFYIS GESYAGIYVPTLSAQVVQGIKTGEKPTINFKGYLVGNGVANDEKTSGLGAFVHFVHGMALISDKMFQQAAGACKPDFSGRSQKCADSIGKIDKAVDLLNI YDVLEPCYHDPEGQRQKQPKLPTSFQELGQTDRPLQVRKRMFGRAWPLWADHFQNFRQNSSSATTDYSMPLWPQLAQKAGGVMCVNDEVATAWLNDETVR KALHAQPVSVAGPWELCSDRISYGFGAGDMVPIHKNLTTQGYRALIYSGDHDMCVPYTGTEAWTSSLGYNVIDEWRPWISGDDNQVAGYLEGYEHNLTFL TIKGAGHTVPEYKPRESLDFFTRFLDAKSI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G12910		SCPL20	serine carboxypeptidase-like 2...		Lus10026830 [exp]	0	1
AT4G25050		ACP4	acyl carrier protein 4 (.1.2)		Lus10033836 [exp]	4.2	0.8791
AT5G20110			Dynein light chain type 1 fami...		Lus10014484 [exp]	11.6	0.9034
AT1G31690			Copper amine oxidase family pr...		Lus10026757 [exp]	11.7	0.9087
AT1G05010		ACO4, EAT1, EFE	ethylene forming enzyme, ethyl...		Lus10015153 [exp]	12.0	0.8957
AT3G26700			Protein kinase superfamily pro...		Lus10041509 [exp]	14.0	0.8843
AT3G50280			HXXXD-type acyl-transferase fa...		Lus10031149 [exp]	16.6	0.8965
AT5G51520			Plant invertase/pectin methyle...		Lus10031712 [exp]	17.5	0.8894
AT1G75240	ZF_HD	ATHB33, ZHD5	zinc-finger homeodomain 5, hom...		Lus10031885 [exp]	18.2	0.8870
AT5G20080			FAD/NAD(P)-binding oxidoreduct...		Lus10030059 [exp]	18.4	0.8865
AT1G76880	Trihelix		Duplicated homeodomain-like su...		Lus10028582 [exp]	19.7	0.8835

Compare expression of checked genes

Lus10026830 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.