Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12910 596 / 0 SCPL20 serine carboxypeptidase-like 20 (.1) AT3G25420 572 / 0 SCPL21 serine carboxypeptidase-like 21 (.1) AT3G10450 306 / 3e-99 SCPL7 serine carboxypeptidase-like 7 (.1.2) AT5G09640 297 / 2e-95 SNG2, SCPL19 SINAPOYLGLUCOSE ACCUMULATOR 2, serine carboxypeptidase-like 19 (.1) AT2G22990 274 / 9e-87 SCPL8, SNG1 SERINE CARBOXYPEPTIDASE-LIKE 8, sinapoylglucose 1 (.1.2.3.4.5.6) AT3G12230 264 / 6e-83 SCPL14 serine carboxypeptidase-like 14 (.1) AT5G23210 259 / 1e-80 SCPL34 serine carboxypeptidase-like 34 (.1.2.3.4) AT5G08260 253 / 3e-78 SCPL35 serine carboxypeptidase-like 35 (.1) AT4G15100 251 / 3e-77 SCPL30 serine carboxypeptidase-like 30 (.1) AT4G30810 243 / 2e-74 SCPL29 serine carboxypeptidase-like 29 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026830 [exp] 838 / 0 AT4G12910 595 / 0.0 serine carboxypeptidase-like 20 (.1) Lus10020207 [exp] 786 / 0 AT4G12910 553 / 0.0 serine carboxypeptidase-like 20 (.1) Lus10025859 [exp] 591 / 0 AT4G12910 694 / 0.0 serine carboxypeptidase-like 20 (.1) Lus10038240 [exp] 587 / 0 AT4G12910 689 / 0.0 serine carboxypeptidase-like 20 (.1) Lus10020206 [exp] 566 / 0 AT4G12910 603 / 0.0 serine carboxypeptidase-like 20 (.1) Lus10009562 [exp] 551 / 0 AT4G12910 617 / 0.0 serine carboxypeptidase-like 20 (.1) Lus10020387 [exp] 549 / 0 AT4G12910 627 / 0.0 serine carboxypeptidase-like 20 (.1) Lus10007731 [exp] 317 / 9e-103 AT5G09640 504 / 4e-177 SINAPOYLGLUCOSE ACCUMULATOR 2, serine carboxypeptidase-like 19 (.1) Lus10018667 [exp] 304 / 7e-91 AT1G73280 478 / 2e-153 serine carboxypeptidase-like 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G054300 [exp] 682 / 0 AT4G12910 636 / 0.0 serine carboxypeptidase-like 20 (.1) Potri.014G177500 [exp] 630 / 0 AT4G12910 743 / 0.0 serine carboxypeptidase-like 20 (.1) Potri.013G124900 [exp] 305 / 1e-98 AT1G73280 513 / 0.0 serine carboxypeptidase-like 3 (.1) Potri.001G291300 [exp] 304 / 4e-98 AT1G33540 434 / 9e-150 serine carboxypeptidase-like 18 (.1) Potri.001G290900 [exp] 303 / 1e-97 AT1G33540 430 / 8e-148 serine carboxypeptidase-like 18 (.1) Potri.001G291800 [exp] 302 / 4e-97 AT1G73300 432 / 1e-148 serine carboxypeptidase-like 2 (.1) Potri.001G291700 [exp] 279 / 4e-88 AT1G33540 414 / 8e-142 serine carboxypeptidase-like 18 (.1) Potri.001G290800 [exp] 274 / 3e-87 AT1G33540 404 / 6e-139 serine carboxypeptidase-like 18 (.1) Potri.001G312800 [exp] 271 / 2e-85 AT1G33540 402 / 3e-137 serine carboxypeptidase-like 18 (.1) Potri.005G091700 [exp] 253 / 4e-78 AT5G23210 652 / 0.0 serine carboxypeptidase-like 34 (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00450 [flax] [poplar] Peptidase_S10 Serine carboxypeptidase
Representative CDS sequence Show only first row Show all	>Lus10026831 pacid=23142952 polypeptide=Lus10026831 locus=Lus10026831.g ID=Lus10026831.BGIv1.0 annot-version=v1.0 ATGGATAATCCAAGAAGGAGCTCTGCACCCAAACGACGATGGTGTTTGTGCCTGCAGCTGGTGATTATGATGAGTTATGGGTTAACCGAAGCCGCTCCGG CCGGCTCACTGGTCACTTACTTACCCGGCTACAGTGGCACTTTTCCATCCAAACACTACTCAGGGTACGTGAGCTTGGAGGAAGAAGAGAAGAACATGTT CTACTACTTCGTTGTGTCGGAGAGGAATCCTAAGGAGGATCCAGTTGTACTGTGGCTCAACGGTGGCCCTGGCTGCTCCAGCTTCGATGGCTTTGTTTAT GAACATGGGCCGTTCAACTTTGAAAAAGGGCAGAGCAAAGCAAGTCTTCCAAAGTTGCATCTTAATCCATTCAGCTGGTCTAAAGTGTCCAACATTATAT ATTTGGACTCACCTTGTGGGGTGGGACTATCCTACTCCTCCAACGCTTCCAACTATCAAACTGATGACCGTCAAACAGCCATTGATTCCCACAGTTTCCT TCTCAAGTGGTTCGGAATGTACCCAGAATTCCAGCAAAATTCGTTTTACATCTCTGGAGAATCATATGCTGGTATTTACGTCCCAACTCTTGCTGCTCAA GTCGTCAAAGGCATCAAAGCCGGCAAAAAGCCCGCCATCAACCTCAAGGGTTATCTTATCGGGAACGGAATCTCGAACGACGAAGCGACCGATGGACTTG GTGCTTTTGTCCGTTTTGTTCGCGGGATGGCCCTCATCTCCGACAACATGTTTGAGGAAGCTGCGAGTGCCTGCGAACCCAACTTTAGTAGTAACCGTAA AATCTGCCACAACATCGTCGACAAAATCGATAGGGCGGTGAGGCAGTTGAATATATATGACGTGTTGGAGCCATGCTACCACGACCCAGAAGGACAGCAG CTGAAGCAACCCAAATTACCGGCGAGCTTCCGACAACTTGGGAAAACTGATGGGCCGCTCAAAGTTCGGAAGCGAATGTTTGGGCGGGCTTGGCCTCTTT GGGCTGACCACTTTACCAACTTCCGGCCCAACTCTACTAACGATATGCCACCATGGCCTCAACTTGCACAAAGAGCTGGCGGGGTTCTCTGCACCAATGA TGAAGTTGCAACAGCTTGGTTGAACAATGAATCTGTTAGGAAGGCTCTCCATGCTCAACCAATATCCACGACGGGTTCATGGGAGTTGTGCACAGACAGA GTATCATATATGTATGGTGCAGGAAATATGGTACCAATCCACAGGAGTCTAACCAAACAAGGATACCGAGCCCTTATTTATAGCGGAGATCACGATATGT GTGTTCCATACACGGGAACGGAGGCCTGGACCAGCTCCCTTGGTTACAACATCATTGACCCATGGAGGCCATGGATGTCTGGTGATGACAATCAAGTTGC TGGATACCTGAAAGGATATGAACACAACTTCACATTTCTCACCATTAAGGGTGCAGGACATACAGTTCCAGAGTACAAGCCCCGTGAGTCTCTGGATTTC TTCACTAAATTTCTCGACGCCAAACCAATATAA
AA sequence Show only first row Show all	>Lus10026831 pacid=23142952 polypeptide=Lus10026831 locus=Lus10026831.g ID=Lus10026831.BGIv1.0 annot-version=v1.0 MDNPRRSSAPKRRWCLCLQLVIMMSYGLTEAAPAGSLVTYLPGYSGTFPSKHYSGYVSLEEEEKNMFYYFVVSERNPKEDPVVLWLNGGPGCSSFDGFVY EHGPFNFEKGQSKASLPKLHLNPFSWSKVSNIIYLDSPCGVGLSYSSNASNYQTDDRQTAIDSHSFLLKWFGMYPEFQQNSFYISGESYAGIYVPTLAAQ VVKGIKAGKKPAINLKGYLIGNGISNDEATDGLGAFVRFVRGMALISDNMFEEAASACEPNFSSNRKICHNIVDKIDRAVRQLNIYDVLEPCYHDPEGQQ LKQPKLPASFRQLGKTDGPLKVRKRMFGRAWPLWADHFTNFRPNSTNDMPPWPQLAQRAGGVLCTNDEVATAWLNNESVRKALHAQPISTTGSWELCTDR VSYMYGAGNMVPIHRSLTKQGYRALIYSGDHDMCVPYTGTEAWTSSLGYNIIDPWRPWMSGDDNQVAGYLKGYEHNFTFLTIKGAGHTVPEYKPRESLDF FTKFLDAKPI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G12910		SCPL20	serine carboxypeptidase-like 2...		Lus10026831 [exp]	0	1
AT5G50890			alpha/beta-Hydrolases superfam...		Lus10031455 [exp]	12.8	0.8155
AT1G24620			EF hand calcium-binding protei...		Lus10007816 [exp]	18.6	0.8050
AT4G05220			Late embryogenesis abundant (L...		Lus10006755 [exp]	20.8	0.8038
AT2G15680		AtCML30	calmodulin-like 30, Calcium-bi...		Lus10019863 [exp]	24.2	0.7987
AT5G53110			RING/U-box superfamily protein...		Lus10007845 [exp]	30.2	0.8023
AT1G49000			unknown protein		Lus10042953 [exp]	30.6	0.7770
AT2G03500	GARP		Homeodomain-like superfamily p...		Lus10019452 [exp]	32.4	0.8003
AT1G60783			unknown protein		Lus10026693 [exp]	33.9	0.7987
AT2G39840		TOPP4	type one serine/threonine prot...		Lus10011827 [exp]	36.1	0.8015
AT1G23550		SRO2	similar to RCD one 2 (.1)		Lus10013012 [exp]	36.6	0.7966

Compare expression of checked genes

Lus10026831 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.