Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47390 876 / 0 PHS1 PHOTOSENSITIVE 1, cytidine/deoxycytidylate deaminase family protein (.1.2) AT4G20960 92 / 7e-20 Cytidine/deoxycytidylate deaminase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020208 [exp] 1172 / 0 AT3G47390 885 / 0.0 PHOTOSENSITIVE 1, cytidine/deoxycytidylate deaminase family protein (.1.2) Lus10036431 [exp] 929 / 0 AT3G47390 870 / 0.0 PHOTOSENSITIVE 1, cytidine/deoxycytidylate deaminase family protein (.1.2) Lus10041104 [exp] 866 / 0 AT3G47390 791 / 0.0 PHOTOSENSITIVE 1, cytidine/deoxycytidylate deaminase family protein (.1.2) Lus10030388 [exp] 103 / 2e-23 AT4G20960 422 / 7e-147 Cytidine/deoxycytidylate deaminase family protein (.1) Lus10037850 [exp] 102 / 3e-23 AT4G20960 430 / 1e-149 Cytidine/deoxycytidylate deaminase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G054000 [exp] 933 / 0 AT3G47390 935 / 0.0 PHOTOSENSITIVE 1, cytidine/deoxycytidylate deaminase family protein (.1.2) Potri.002G158800 [exp] 93 / 5e-20 AT4G20960 422 / 6e-146 Cytidine/deoxycytidylate deaminase family protein (.1) Potri.014G083000 [exp] 65 / 1e-11 AT4G20960 272 / 6e-91 Cytidine/deoxycytidylate deaminase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0387 [flax] [poplar] DHFred PF01872 [flax] [poplar] RibD_C RibD C-terminal domain CL0109 [flax] [poplar] CDA PF00383 [flax] [poplar] dCMP_cyt_deam_1 Cytidine and deoxycytidylate deaminase zinc-binding region CL0109 [flax] [poplar] PF08719 [flax] [poplar] NADAR NADAR domain
Representative CDS sequence Show only first row Show all	>Lus10026832 pacid=23142885 polypeptide=Lus10026832 locus=Lus10026832.g ID=Lus10026832.BGIv1.0 annot-version=v1.0 ATGCCTCTTTATTTAGCAGCAGCTGCCTACATCAACTCTCCCTTCATTTGTAAAGCTTCCTCAATCTCCAGCAATCTCCACATCGACCATAGACACGGAC ATGATGCAGCCTACATCAAACGTGCTGCCCAAATTGCTGACTCCTCTGCTGGGTTGACTTCTCCCCACCCTAATTTCGCCTGCGTCCTAGTGACTCCTTC CAGTAAGGTAGCTGGGGAAGGTTATCTCTATGCGCAGGGCACCAAGCCGGCTGAGGTTCAGGCGGTAGAGGCGGCTGGTCAGTTGAGCAAAGGTGCCACA GCATATTTGAATATGGAACCTGGGGATTGCCATGGAGACCAAGCTGCTGTCAAGGCTCTTGTTGAGGCAGGGGTTTCGAGGGTGGTGGTTGGGATAAGGC ATCCGTTGAAGCATTTTCAAGGCAATGCTATTCGTGCTCTAAGAGGTGAGGGTTTGCAGGTTGATGTGCTTGGAGAAGATTTGCAGAGTACCATAGTTGA GGAAGCTCGGAAATCATGCCTTCTTGTCAATGTTCCTTTGATTTATAGAGCTACTTCTCAAATTCCCTTTTCTTTTCTCAAGTATGCTATTACTCTTGAT GGAAAAATCGCTGCCAGTAGTGGACATGCAGCATGGATAAGCAGCAGGAAGTCAAGGAATCGAGTTTTTGAACTTCGTGGGAGAAGTGATGCTGTTATTG TTGGAGGAAATACTGTACGTAAGGACAATCCTCGGTTGACGGCTAGACACGGTGGAGATCATATGCCTTTGAGGGTTGTAATGACTCAATCTCTTGATCT TCCGGACGAAGCAAATCTTTGGGATGTCTCTGATGTGCCCACCATGGTTGTAACCCAAAGGGGTGCAAGAAAGAAATTCCAAAAACAACTTGCTTCCAAA GGAGTTGAAGTAGTAGAGTTTGACAGTCTCAACCCACGAGAAGTTATGGAATATTTTCATGATCGTGGCTATCTTTCTATTATGTGGGAGTGTGGAGGTA CACTTGCGGCTTCTGCTATTTCAGCTGGCGTGATACACAAGGTCTATGCATTTGTTGCCCCAAAAATTATTGGAGGTAAGAATGCACAAACTCCTGTGGG TGAACTGGGGATGGTTGAGATGTCTCAGGCTTTGGATTTAATTGACGTTTGCTATGAGCAGATTGGCCCAGACATTCTTATCAGTGGATTTCTCCTGCCT ATACCAGACCCAACACCTGTTATTCCATCACAGGATGAAACATTGGCAATCGATCCCACTGTCAACCAATACGAATCAAGCATCATATGTTTCAACAAAG CATGGGATCCTTATGGAGCGTTTTCAAAATTTTCTCCCCATCCAATGAAGGTGCCTGATGAAAACGGAGTACTAGTCACTTGGTCAAGCGTAGAGCATTA TTACCAGGCGTGCAAATTTATGGGAGTCGATGATCCGGCAGCACGAGATTGCACAATAAAGATACACTGTGCGAAGAGTCCAGAAGAAGCAGCAAGAGTT GGAAGGTCGATGCAAAGGATGCATCCTCAACTGATGAGACCCGATTGGGAAAAAGTGAAGATTGATGTCATGTACAGTGGATTAAGGTACAAGTTCTCAA ATTATCCTTATCTAAAATCAATGCTGCTGGCAACAGAAGGGTGTGTTCTGGTTGAAACATCACCAAATGATCTGTTCTGGGGTGGAGGCCGGGAAGGCGA GGGACTAAATTACATGGGCAGACTATTAATGAAGTTAAGATCAGAATTGGCTGGTAAATCTTGTACGCCTGGTGAGAACACTTGCTTAGCTCTTTAA
AA sequence Show only first row Show all	>Lus10026832 pacid=23142885 polypeptide=Lus10026832 locus=Lus10026832.g ID=Lus10026832.BGIv1.0 annot-version=v1.0 MPLYLAAAAYINSPFICKASSISSNLHIDHRHGHDAAYIKRAAQIADSSAGLTSPHPNFACVLVTPSSKVAGEGYLYAQGTKPAEVQAVEAAGQLSKGAT AYLNMEPGDCHGDQAAVKALVEAGVSRVVVGIRHPLKHFQGNAIRALRGEGLQVDVLGEDLQSTIVEEARKSCLLVNVPLIYRATSQIPFSFLKYAITLD GKIAASSGHAAWISSRKSRNRVFELRGRSDAVIVGGNTVRKDNPRLTARHGGDHMPLRVVMTQSLDLPDEANLWDVSDVPTMVVTQRGARKKFQKQLASK GVEVVEFDSLNPREVMEYFHDRGYLSIMWECGGTLAASAISAGVIHKVYAFVAPKIIGGKNAQTPVGELGMVEMSQALDLIDVCYEQIGPDILISGFLLP IPDPTPVIPSQDETLAIDPTVNQYESSIICFNKAWDPYGAFSKFSPHPMKVPDENGVLVTWSSVEHYYQACKFMGVDDPAARDCTIKIHCAKSPEEAARV GRSMQRMHPQLMRPDWEKVKIDVMYSGLRYKFSNYPYLKSMLLATEGCVLVETSPNDLFWGGGREGEGLNYMGRLLMKLRSELAGKSCTPGENTCLAL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G47390		PHS1	PHOTOSENSITIVE 1, cytidine/deo...		Lus10026832 [exp]	0	1
AT1G18750	MADS	AGL65, AGL102	AGAMOUS-like 65 (.1.2)		Lus10019089 [exp]	2.8	0.8331
AT3G28760			unknown protein		Lus10005250 [exp]	8.6	0.8112
AT3G12170			Chaperone DnaJ-domain superfam...		Lus10026315 [exp]	10.4	0.8037
AT4G29540		AtLpxA	bacterial transferase hexapept...		Lus10008565 [exp]	17.0	0.7883
AT1G20410			Pseudouridine synthase family ...		Lus10005645 [exp]	17.3	0.7678
AT2G22540	MADS	AGL22, SVP	SHORT VEGETATIVE PHASE, AGAMOU...		Lus10035942 [exp]	17.7	0.8107
AT5G35170			adenylate kinase family protei...		Lus10019071 [exp]	18.7	0.7631
					Lus10002136 [exp]	21.2	0.7895
AT1G78010			tRNA modification GTPase, puta...		Lus10029578 [exp]	22.4	0.7921
AT1G13120		EMB1745	embryo defective 1745 (.1)		Lus10006979 [exp]	23.0	0.7665

Compare expression of checked genes

Lus10026832 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.