Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G03500 107 / 1e-24 Ankyrin repeat family protein (.1) AT1G03670 107 / 2e-24 ankyrin repeat family protein (.1) AT4G03460 97 / 6e-21 Ankyrin repeat family protein (.1) AT2G31820 93 / 7e-20 Ankyrin repeat family protein (.1) AT1G07710 92 / 2e-19 Ankyrin repeat family protein (.1) AT5G02620 90 / 6e-19 ATANK1, ANK1 ankyrin-like1 (.1) AT5G60070 89 / 2e-18 ankyrin repeat family protein (.1) AT1G05640 88 / 3e-18 Ankyrin repeat family protein (.1) AT5G54610 81 / 3e-16 ANK ankyrin (.1) AT4G03450 81 / 7e-16 Ankyrin repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020209 [exp] 496 / 2e-170 AT1G03670 175 / 6e-47 ankyrin repeat family protein (.1) Lus10013878 [exp] 110 / 1e-26 AT1G03670 112 / 4e-27 ankyrin repeat family protein (.1) Lus10025289 [exp] 95 / 2e-20 AT1G07710 577 / 0.0 Ankyrin repeat family protein (.1) Lus10041537 [exp] 91 / 2e-19 AT5G51160 350 / 2e-117 Ankyrin repeat family protein (.1) Lus10021814 [exp] 83 / 1e-16 AT2G01680 771 / 0.0 Ankyrin repeat family protein (.1) Lus10034579 [exp] 82 / 3e-16 AT2G01680 768 / 0.0 Ankyrin repeat family protein (.1) Lus10003308 [exp] 80 / 1e-15 AT3G12360 981 / 0.0 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) Lus10024440 [exp] 77 / 7e-15 AT1G07710 618 / 0.0 Ankyrin repeat family protein (.1) Lus10003986 [exp] 76 / 2e-14 AT3G09550 831 / 0.0 Ankyrin repeat family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G133700 [exp] 148 / 7e-40 AT1G03670 185 / 8e-53 ankyrin repeat family protein (.1) Potri.011G133300 [exp] 148 / 1e-38 AT1G03670 250 / 6e-75 ankyrin repeat family protein (.1) Potri.011G133400 [exp] 148 / 2e-38 AT4G03500 251 / 3e-75 Ankyrin repeat family protein (.1) Potri.019G107800 [exp] 106 / 3e-24 AT4G03500 129 / 2e-31 Ankyrin repeat family protein (.1) Potri.019G105900 [exp] 106 / 3e-24 AT4G03500 129 / 2e-31 Ankyrin repeat family protein (.1) Potri.019G107000 [exp] 105 / 5e-24 AT4G03500 140 / 5e-35 Ankyrin repeat family protein (.1) Potri.019G107700 [exp] 103 / 2e-23 AT4G03500 129 / 2e-31 Ankyrin repeat family protein (.1) Potri.019G108000 [exp] 102 / 7e-23 AT4G03500 126 / 3e-30 Ankyrin repeat family protein (.1) Potri.019G108801 [exp] 100 / 9e-23 AT4G03500 101 / 4e-23 Ankyrin repeat family protein (.1) Potri.013G133700 [exp] 102 / 1e-22 AT1G03670 197 / 1e-54 ankyrin repeat family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0465 [flax] [poplar] Ank PF00023 [flax] [poplar] Ank Ankyrin repeat
Representative CDS sequence Show only first row Show all	>Lus10026833 pacid=23142797 polypeptide=Lus10026833 locus=Lus10026833.g ID=Lus10026833.BGIv1.0 annot-version=v1.0 ATGCTGAATCAGATCCATCTACCTCGATGGTCAGGCCCAAGCCTTCACTCTCATTGCCGATCAGTCGGCAGTAGTGATTTACTTTATTCTACAATCGTAC CCACCGGAGCTTCCATCCCGCCGCCGGAACTGCTTTATTGTTATTACTTTATTGGAGGAGAACTTTGTCTCTCACGATTAGAAGCAGAAGAAGAAGAAGT ATACCATAAGATGCCGAGAGAGACAAGCCCTGGCCTCAAGATTCTCTGGTTTTGGACCCTTGGCACTGCAGCAGTACTGGTTACAACTGTGGTGAGGACG AGGCTTAGAGACATGGAGCAGCTCATGAACGCCGAAGAACAGTCTCATAATCAGCTTCCCCCACAACAACAACAGCAACATCCTGAAGATACCACCCCTG CAGATTCCATCATTCTAGACAGCTTGCCACCACCCAGTGATGCGATTGGTCACAGCTGGTCACAAGAACACTATTTTCCACATTGCAGCAAGATGTGGAG GGATAAATATAGCAGAGAAGATTATTGGTTTCTTTCCAGGCCTGTTGCAGCAAGGTTAGGCCGCCTTGAAATGATTCAGTTGTTGGTGAACTGTGCAAAA CTTGTTGAAATTGAAGTGGGGAAGGAGTTGCTAAGAATGGAGAATCTAGACAAGGACACGGCTCTGCATGTTGCCGTACGAAATGGGCACTTTGAGTTCT ACAAGATCGCACAACATATTATTGAAACTGTTCCTTCATGCTGTCATGGAGGTAGGTGTGGCATGAATGTTCTTCATGCGGCCATTATCAGAGCTGATAA GAATTTCTTGCAAGAGGTGCTGAAACGACATCCATCTGCCACCAAAGAACCAGATCAGTACGGATGGATTCCTCTTCACTATGCTGCCTATTTGGGGAAT GCAGAAGTTGTTGAACTCTTTCTTCAATTCAACAGCTCACTTGGTTATGTGAAGGACAAAGGCAGCATGGCTGCTCTTCATCTTTCTGCCAAGTCAGGGC ATGTGAACGTTGCACAGAAGCTCACTGCAATGTGTCCTGATACCTCTGAATTGTTGGACAACCACTATCGAACCGCTCTGCATGTTGCAGCAGAAAACGG GAAAAGAAGTGTGATCAGTTTTTTCCTGACGGAACAGATTTACTGGGATCTCATGAATGAGCCGGATGAAATTGGAAACATACCTTTGCATTCTGCTGCG GTTCAAGGTCATTCTGAAATTGTCTTGCTGTTGGCAAATGACCCTAGAGTAGATAAAGGAACCCTGAATAACGCAGGATTCACCGCATCTGACATAATAA TGTCCAGTCCACTGTTCAAGCAACATGAGAAGAATGGTGATTGGGAGCTGTGGCCTATGATGACGGCTTGGAATGCCGAGAACAAAGTCAGGTTTCTAAC TACACATGACGTGGGAGCTAACTCAATGGCATTTGGTTTGTGCCTAGGGCATCAATGTTTCTCCACTTTTGTGGAATCAGGAGTTATAAGGGAGAGGGTA ATATGGTGGTTACGTTGA
AA sequence Show only first row Show all	>Lus10026833 pacid=23142797 polypeptide=Lus10026833 locus=Lus10026833.g ID=Lus10026833.BGIv1.0 annot-version=v1.0 MLNQIHLPRWSGPSLHSHCRSVGSSDLLYSTIVPTGASIPPPELLYCYYFIGGELCLSRLEAEEEEVYHKMPRETSPGLKILWFWTLGTAAVLVTTVVRT RLRDMEQLMNAEEQSHNQLPPQQQQQHPEDTTPADSIILDSLPPPSDAIGHSWSQEHYFPHCSKMWRDKYSREDYWFLSRPVAARLGRLEMIQLLVNCAK LVEIEVGKELLRMENLDKDTALHVAVRNGHFEFYKIAQHIIETVPSCCHGGRCGMNVLHAAIIRADKNFLQEVLKRHPSATKEPDQYGWIPLHYAAYLGN AEVVELFLQFNSSLGYVKDKGSMAALHLSAKSGHVNVAQKLTAMCPDTSELLDNHYRTALHVAAENGKRSVISFFLTEQIYWDLMNEPDEIGNIPLHSAA VQGHSEIVLLLANDPRVDKGTLNNAGFTASDIIMSSPLFKQHEKNGDWELWPMMTAWNAENKVRFLTTHDVGANSMAFGLCLGHQCFSTFVESGVIRERV IWWLR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G03500			Ankyrin repeat family protein ...		Lus10026833 [exp]	0	1
AT4G20090		EMB1025	embryo defective 1025, Pentatr...		Lus10001223 [exp]	2.2	0.8553
AT1G04945			HIT-type Zinc finger family pr...		Lus10008703 [exp]	2.4	0.8244
AT4G01590			unknown protein		Lus10006847 [exp]	3.5	0.8090
AT4G17380		MSH4, ATMSH4	ARABIDOPSIS MUTS HOMOLOG 4, M...		Lus10000166 [exp]	6.5	0.8332
AT1G61470			Polynucleotidyl transferase, r...		Lus10007771 [exp]	9.5	0.7940
AT1G50910			unknown protein		Lus10043058 [exp]	10.7	0.8114
AT4G30820			cyclin-dependent kinase-activa...		Lus10022901 [exp]	13.0	0.7553
AT1G15910		FDM1	factor of DNA methylation 1, X...		Lus10006221 [exp]	14.3	0.7921
AT3G50670		U1SNRNP, U1-70K	U1 small nuclear ribonucleopro...		Lus10026026 [exp]	18.2	0.7998
AT1G07380			Neutral/alkaline non-lysosomal...		Lus10034565 [exp]	18.7	0.7995

Compare expression of checked genes

Lus10026833 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.