Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02780 418 / 8e-149 IDI2, IPIAT1, IPP2 ATISOPENTENYL DIPHOSPHE ISOMERASE 2, isopentenyl pyrophosphate:dimethylallyl pyrophosphate isomerase 2 (.1) AT5G16440 404 / 4e-143 IDI1, IPP1 isopentenyl diphosphate isomerase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020210 [exp] 514 / 0 AT3G02780 420 / 1e-149 ATISOPENTENYL DIPHOSPHE ISOMERASE 2, isopentenyl pyrophosphate:dimethylallyl pyrophosphate isomerase 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G053700 [exp] 446 / 3e-159 AT3G02780 427 / 4e-152 ATISOPENTENYL DIPHOSPHE ISOMERASE 2, isopentenyl pyrophosphate:dimethylallyl pyrophosphate isomerase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0261 [flax] [poplar] NUDIX PF00293 [flax] [poplar] NUDIX NUDIX domain
Representative CDS sequence Show only first row Show all	>Lus10026834 pacid=23142957 polypeptide=Lus10026834 locus=Lus10026834.g ID=Lus10026834.BGIv1.0 annot-version=v1.0 ATGTCAGCTACCACTGCCAAACTCTTGTACAAGATACCTACAACCACCACCACCGTTAATCGTCTTTCCTCTTCTTCGTTTCCCTCCTTCTCCTTCCTTT CTTCTTCTCGACTCCGATCTCCACGCCCTCGCTTCCTTACCACCACTGTCTTTTCCTCCTCCTCTCGTCCCGTCGCGACCACCGCCATGGGTGACACTCC CGATGCTGGCATGGACGCTGTCCAGAGGCGTCTCATGTTTGAAGACGAGTGCATTTTGGTGGATGAGAATGATCAGGTTGTTGGCCATGATTCCAAGTAT AACTGTCATTTGTGGGAAAATATTCTGAAAGGAAATGCATTGCACAGAGCTTTTAGTGTGTTTCTCTTCAACTCTAAGTATGAGCTGCTCCTTCAGCAAC GTTCTGCTACAAAGGTGACTTTCCCCCTGGTTTGGACGAACACTTGCTGCAGCCATCCTTTGTTTCGTGAACCTGAGCTCATAGATGGAGAATCTCTTGG TGTGAGGAATGCCGCCCAAAGGAAGCTTCTGGATGAACTCGGTATTCCTGCTGAGGATGTGCCCGTGGACCAATTTCTGCCGCTGGGCCGTATTCTCTAC AAGGCTCCTTCTGATGGGAAATGGGGAGAGCATGAACTTGATTACCTGCTCTTCATGGTTCGTGATGTGAATGTAAACCCAAACCCCGATGAGGTGGCCG AGATCAAGTATGTGAACCGGGAGGAGTTACGAGAGCTGTTGAGGAAAGCAGATGCTGGAGAGGGAGGGTTGAAACTGTCGCCTTGGTTTAGGCTAGTAGT AGATAACTTCCTGTTCAAGTGGTGGGATGATGTGGAGAAGGGAACACTCAAGGATGCAGTTGACATGAAAATCCACAAGCTCACTTGA
AA sequence Show only first row Show all	>Lus10026834 pacid=23142957 polypeptide=Lus10026834 locus=Lus10026834.g ID=Lus10026834.BGIv1.0 annot-version=v1.0 MSATTAKLLYKIPTTTTTVNRLSSSSFPSFSFLSSSRLRSPRPRFLTTTVFSSSSRPVATTAMGDTPDAGMDAVQRRLMFEDECILVDENDQVVGHDSKY NCHLWENILKGNALHRAFSVFLFNSKYELLLQQRSATKVTFPLVWTNTCCSHPLFREPELIDGESLGVRNAAQRKLLDELGIPAEDVPVDQFLPLGRILY KAPSDGKWGEHELDYLLFMVRDVNVNPNPDEVAEIKYVNREELRELLRKADAGEGGLKLSPWFRLVVDNFLFKWWDDVEKGTLKDAVDMKIHKLT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G02780		IDI2, IPIAT1, I...	ATISOPENTENYL DIPHOSPHE ISOMER...		Lus10026834 [exp]	0	1
AT3G02780		IDI2, IPIAT1, I...	ATISOPENTENYL DIPHOSPHE ISOMER...		Lus10020210 [exp]	1.0	0.9443
AT3G50300			HXXXD-type acyl-transferase fa...		Lus10031725 [exp]	3.2	0.9127
AT5G37600		ATGLN1;1, GLN1;...	ARABIDOPSIS THALIANA GLUTAMINE...		Lus10010203 [exp]	7.7	0.9034
AT5G67590		FRO1	FROSTBITE1, NADH-ubiquinone ox...		Lus10019261 [exp]	13.0	0.8967
AT5G58590		RANBP1	RAN binding protein 1 (.1)		Lus10037241 [exp]	13.6	0.8797
AT3G09740		ATSYP71, SYP71	syntaxin of plants 71 (.1)		Lus10023178 [exp]	15.7	0.8347
AT1G65930		cICDH	cytosolic NADP+-dependent isoc...		Lus10007380 [exp]	17.9	0.8876
AT5G42190		SKP1B, ASK2	Arabidopsis SKP-like 2, E3 ubi...		Lus10005610 [exp]	19.1	0.8819
AT4G19185			nodulin MtN21 /EamA-like trans...		Lus10033316 [exp]	19.2	0.8468
AT3G09740		ATSYP71, SYP71	syntaxin of plants 71 (.1)		Lus10015075 [exp]	22.2	0.8652

Compare expression of checked genes

Lus10026834 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.