Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16460 281 / 7e-92 Putative adipose-regulatory protein (Seipin) (.1) AT1G29760 142 / 2e-37 Putative adipose-regulatory protein (Seipin) (.1) AT2G34380 134 / 1e-34 Putative adipose-regulatory protein (Seipin) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020213 [exp] 749 / 0 AT5G16460 285 / 4e-93 Putative adipose-regulatory protein (Seipin) (.1) Lus10034735 [exp] 132 / 3e-34 AT1G29760 231 / 3e-70 Putative adipose-regulatory protein (Seipin) (.1) Lus10033273 [exp] 130 / 1e-33 AT1G29760 228 / 5e-69 Putative adipose-regulatory protein (Seipin) (.1) Lus10007323 [exp] 129 / 1e-33 AT1G29760 355 / 1e-119 Putative adipose-regulatory protein (Seipin) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G085850 [exp] 365 / 7e-124 AT5G16460 269 / 5e-87 Putative adipose-regulatory protein (Seipin) (.1) Potri.011G072200 [exp] 146 / 1e-38 AT1G29760 382 / 4e-127 Putative adipose-regulatory protein (Seipin) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06775 [flax] [poplar] Seipin Putative adipose-regulatory protein (Seipin)
Representative CDS sequence Show only first row Show all	>Lus10026836 pacid=23142926 polypeptide=Lus10026836 locus=Lus10026836.g ID=Lus10026836.BGIv1.0 annot-version=v1.0 ATGGCGGCTGACAAGGAGGAGCAAGATAGTTACTACGGCCACAATCAAGATTGGTTCACAAAACTGCTGTCATTCCAATCAGACATCATCTACAACTGCG TTGTCTCCCTCTTGGCTCCTTTCCAAACTCTGTCGTCCATGGCCTCCGAATCATACCGCAGGACGGAGGATCAGATGGCCGCCAGTTGTAATAAAGTTGA TCACAAGCTAATCAGCCACGGCAGTTTGGTGACGATGATGAGGAAGATTGGATTGGGTGTTGTCGGCGTCGTTCATGCGTCCTTGGTACTGATGATGTTC ATGGCTTTGTCTGTGGGTTTAGGAGTTGGGTTGATCAGAATGTTGGCTGAGGAACCTGTTTTCTTGAGGCACAAGCTTCTGTTTGACTACACTCTTCCAA ACCCCACGGCCACTCTTCACTTGGGTAGTAAACACTCTGCTGCTGCTGCTGCTGCTATTCCAGTTGGTCATACCTTTCATGTCTCTCTCGCTCTTCTCAT GCCCGAATCCGATTACAATCGACACATTGGTCTCTTCCAGCTGAGTGCAGAAGTGTTATCTGCCGGTGGGGATGTGACGGCGAGATCCAGCCGGCCCTGC ATGCTCAAATTCAGAAGCTTGCCGGTGCGGATGGCTCGAACTTTCGCAATGGGAATCCCGTTGTTACTAGGAATATCTGACGAAACCCAGAAGATATCCG TCCAACTCTTGAAACACAAGGAAGTATACTACCAAAGAACAGGGGCCATCCGAGTTACACTGAGTCCCAGGTCCGGAACATCTTACCTTCCTCAGCTCTA CGAGGCCGAATTGGTCATCAACTCCCAACTTCCATGGTCCAAGGCGCTGATGAAGAGATGGAAATGGACGCTTTATGTTTGGACCTCACTCTACACCTAC ATTGCCTTTGTGATCATCCTCATCTCTTGCTTCCGTACCCTTCTCTTCCCTATCCCGGCTCTGATTCTCAATCGGCAGGGCCGCGGAGCTAGGGAAATCA GCGATGGTGATGCTGAAGAAGAGCTGAGAAGTGGGGATGAAAGGGAGACAACAATAGAGATGGTGAGGAAATGGCAGATGCGAAGGAGGAAGAGGAAGGT TTCCAGCTATCTGTATGGAGGAGAAGAGACTCGAGCTTCTGGGCCATCATCAGCAGTCTCTAGCATCACTATGAGCTGCAGAGACGATGCTAGTAGCAGC ACTGCCCCTGAAGAAGAAATTACTGACAGTGAATCCGTTTGTTTTGGTGGTTAG
AA sequence Show only first row Show all	>Lus10026836 pacid=23142926 polypeptide=Lus10026836 locus=Lus10026836.g ID=Lus10026836.BGIv1.0 annot-version=v1.0 MAADKEEQDSYYGHNQDWFTKLLSFQSDIIYNCVVSLLAPFQTLSSMASESYRRTEDQMAASCNKVDHKLISHGSLVTMMRKIGLGVVGVVHASLVLMMF MALSVGLGVGLIRMLAEEPVFLRHKLLFDYTLPNPTATLHLGSKHSAAAAAAIPVGHTFHVSLALLMPESDYNRHIGLFQLSAEVLSAGGDVTARSSRPC MLKFRSLPVRMARTFAMGIPLLLGISDETQKISVQLLKHKEVYYQRTGAIRVTLSPRSGTSYLPQLYEAELVINSQLPWSKALMKRWKWTLYVWTSLYTY IAFVIILISCFRTLLFPIPALILNRQGRGAREISDGDAEEELRSGDERETTIEMVRKWQMRRRKRKVSSYLYGGEETRASGPSSAVSSITMSCRDDASSS TAPEEEITDSESVCFGG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G16460			Putative adipose-regulatory pr...		Lus10026836 [exp]	0	1
AT4G31270	Trihelix		sequence-specific DNA binding ...		Lus10041120 [exp]	4.0	0.7167
					Lus10011286 [exp]	4.9	0.6969
AT2G36780			UDP-Glycosyltransferase superf...		Lus10023894 [exp]	17.7	0.7147
AT5G45180			Flavin-binding monooxygenase f...		Lus10023942 [exp]	20.9	0.6661
AT1G78780			pathogenesis-related family pr...		Lus10027315 [exp]	54.4	0.5809
AT3G62390		TBL6	TRICHOME BIREFRINGENCE-LIKE 6 ...		Lus10017671 [exp]	62.3	0.6480
AT4G12500			Bifunctional inhibitor/lipid-t...		Lus10032258 [exp]	65.1	0.6441
AT1G78610		MSL6	mechanosensitive channel of sm...		Lus10012515 [exp]	69.2	0.5669
AT1G49430		LRD2, LACS2	LATERAL ROOT DEVELOPMENT 2, lo...		Lus10023832 [exp]	72.2	0.6234
AT1G20640		NLP4	Plant regulator RWP-RK family ...		Lus10030744 [exp]	93.7	0.6267

Compare expression of checked genes

Lus10026836 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.