Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13480 724 / 0 FY Transducin/WD40 repeat-like superfamily protein (.1.2) AT4G15900 116 / 2e-27 PRL1 pleiotropic regulatory locus 1 (.1) AT3G49660 105 / 7e-25 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT3G16650 103 / 2e-23 Transducin/WD40 repeat-like superfamily protein (.1) AT5G23430 104 / 5e-23 Transducin/WD40 repeat-like superfamily protein (.1.2) AT4G02730 100 / 9e-23 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT2G41500 101 / 2e-22 EMB2776, LIS LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) AT5G25150 101 / 3e-22 TAF5 TBP-associated factor 5 (.1) AT1G11160 98 / 5e-21 Transducin/WD40 repeat-like superfamily protein (.1) AT1G61210 97 / 1e-20 DWA3 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020214 [exp] 1046 / 0 AT5G13480 738 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10006511 [exp] 117 / 1e-27 AT4G15900 753 / 0.0 pleiotropic regulatory locus 1 (.1) Lus10037500 [exp] 115 / 5e-27 AT4G15900 752 / 0.0 pleiotropic regulatory locus 1 (.1) Lus10021059 [exp] 114 / 2e-26 AT2G41500 706 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10041007 [exp] 111 / 3e-25 AT5G23430 721 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10004167 [exp] 110 / 4e-25 AT2G41500 708 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10013452 [exp] 107 / 7e-24 AT1G50410 1003 / 0.0 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) Lus10006916 [exp] 101 / 4e-23 AT4G02730 506 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10018458 [exp] 104 / 7e-23 AT1G11160 668 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G197900 [exp] 807 / 0 AT5G13480 760 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.001G026800 [exp] 805 / 0 AT5G13480 726 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.T125206 [exp] 804 / 0 AT5G13480 759 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.010G012800 [exp] 117 / 1e-27 AT4G15900 731 / 0.0 pleiotropic regulatory locus 1 (.1) Potri.008G002300 [exp] 109 / 9e-25 AT5G08390 1006 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.010G255400 [exp] 108 / 2e-24 AT5G08390 927 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.002G051900 [exp] 101 / 2e-23 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.006G045800 [exp] 103 / 4e-23 AT2G41500 614 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Potri.018G020200 [exp] 99 / 2e-21 AT5G25150 984 / 0.0 TBP-associated factor 5 (.1) Potri.006G263400 [exp] 97 / 7e-21 AT5G25150 1018 / 0.0 TBP-associated factor 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10026837 pacid=23142824 polypeptide=Lus10026837 locus=Lus10026837.g ID=Lus10026837.BGIv1.0 annot-version=v1.0 ATGAGGAAGCTTACACAAAGACGAGCAGTTGATTATACAAGTACCGCTGTCCGGTACATGCAGATTCGAACATGGCAGCGGGATTCAAGGGATAGAACAG GATTGCAGCCTACCCCTGCAGCAGCCATTGACATGTTACCTACAGTTGCTTATTCGGATAACCCATCAACAAGCTTCTCTGCAAAGTTTGTGCATACATC TTTAAACAAAAACCGCTGTTCTATTAATCGTGTACTGTGGACTCCTAATGGCAGACGTCTAATAACCGGATCTCAAAGCGGGGAGTTCACTCTGTGGAAT GGACAATCATTTAATTTTGAAATGATACTCCAGGCCCATGACCAAGCGATCAGGTCTATGGTATGGAGTCACAATGACAACTGGATGGTCTCTGGTGATG ATGGGGGAGCCATTAAGTATTGGCAGAGCAACATGAATAATGTAAAGGCTAATAAAACTGCTCATAAAGAATCAGTTCGTGACTTAAGCTTCTGTAGGAC TGATTTGAAATTCTGCTCTTGCTCTGATGACACTACTGTTAAAGTCTGGGACTTTGCTCGGTGCCAAGAAGAGCGATCTTTAACTGGGCATGGTTGGGAT GTGAAGAGTGTTGACTGGCACCCTACCAAATCTTTGCTAGTTTCAGGTGGCAAAGACAATCTTGTAAAGCTTTGGGATGCCAAAAGTGGGAGGGAACTTT GTTCATTTCATGGCCACAAAAATACAGTGCTTTGTGTGAAGTGGAACCAAAATGGTAACTGGGTGCTAACTGCTGGAAAGGATCAAACTATCAAGCTTTA TGATATAAGAGCTATGAAGGAGCTGGAGTCTTTCCGTGGACATAAGAAAGATGTGACTGCATTGGCGTGGCACCCATCTCATGAAGAGTACTTTGTCAGC GGGAGCTATGACGGTTCTATCTACCACTGGCTTGTCGGACATGAAACTCCTCAGATTGAAGTTCCTACAGCTCATGACAATAGCGTGTGGGACCTTGCAT GGCATCCTATTGGATATTTGCTTAGCAGTGGTAGCCATGATCACACCACAAAGTTTTGGTGCAGAAATAGGCCTGGAGATACTGCAAGAGATAAATTCAA CATGAATCAGAACCAAGGTTATGGTGAGCAAAACCCCAATCTTGTTGGTCGTTTACCTGGTAATTTTTCTCTTCCGGAGCAACCTTCTCCGGGACCCTTC CCTCCTGGATTGATCCGAAACGAAGGGACTATTCCCGGTGTAGGAGCTGCAATGCCTTTATCTATACCTTCTCTAGATCCCTCACAAGGGGAACAGAACC AAGGCATGCCAATGTCTATTCCATTAGGAGCCCCTCCTCTCCCTCCTGGTCCCCATCCCTCCCTTCTTACTGCCAACCAACAGAGGGGATATCAGCAAAA TCAGCACCCGCAAATGTCCCCACTGCCTATGCCACCAAATATGCAGCAGCTCCAACCTCCGAGCCACCTGCCCTTACTTCAACATCCTCATCTACCCCGC CCTCCACAAATGCCCCCTCATGGCATGCCAGGATCTCTGGCCGCACCTTCGATGCCCGGCCAAAGGATGGTCTCGCCAATGACGCAAGGACATTTTATGG GTATGAATCCGATGCACTCAGGTTCATTGCCCTCAAGTGGTGGGTTTCAGAATGGTATGCCGAATATGCAGGGGCCGTCGAATGCAACTGGAGGCCAAAT GTATCAACAAAATAGTCCATTTAACCGACCACAGGGTGGGCAGATGCCAATGATGCCAGGCTATAATCCATACCAGAGTGGGAATCAATCGGGTATGCAG CCACCACCACTGCCTCCAGGTCCGCCGCCACACTCACAGACGCCTCAATAG
AA sequence Show only first row Show all	>Lus10026837 pacid=23142824 polypeptide=Lus10026837 locus=Lus10026837.g ID=Lus10026837.BGIv1.0 annot-version=v1.0 MRKLTQRRAVDYTSTAVRYMQIRTWQRDSRDRTGLQPTPAAAIDMLPTVAYSDNPSTSFSAKFVHTSLNKNRCSINRVLWTPNGRRLITGSQSGEFTLWN GQSFNFEMILQAHDQAIRSMVWSHNDNWMVSGDDGGAIKYWQSNMNNVKANKTAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWD VKSVDWHPTKSLLVSGGKDNLVKLWDAKSGRELCSFHGHKNTVLCVKWNQNGNWVLTAGKDQTIKLYDIRAMKELESFRGHKKDVTALAWHPSHEEYFVS GSYDGSIYHWLVGHETPQIEVPTAHDNSVWDLAWHPIGYLLSSGSHDHTTKFWCRNRPGDTARDKFNMNQNQGYGEQNPNLVGRLPGNFSLPEQPSPGPF PPGLIRNEGTIPGVGAAMPLSIPSLDPSQGEQNQGMPMSIPLGAPPLPPGPHPSLLTANQQRGYQQNQHPQMSPLPMPPNMQQLQPPSHLPLLQHPHLPR PPQMPPHGMPGSLAAPSMPGQRMVSPMTQGHFMGMNPMHSGSLPSSGGFQNGMPNMQGPSNATGGQMYQQNSPFNRPQGGQMPMMPGYNPYQSGNQSGMQ PPPLPPGPPPHSQTPQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G13480		FY	Transducin/WD40 repeat-like su...		Lus10026837 [exp]	0	1
AT1G40087			Plant transposase (Ptta/En/Spm...		Lus10035798 [exp]	1.0	0.8989
AT1G16280		SWA3, AtRH36	SLOW WALKER 3, Arabidopsis tha...		Lus10042754 [exp]	3.0	0.8720
AT5G41580			RING/U-box superfamily protein...		Lus10032307 [exp]	4.9	0.8734
AT4G29000	CPP		Tesmin/TSO1-like CXC domain-co...		Lus10023656 [exp]	11.5	0.8583
AT1G48410		AGO1	ARGONAUTE 1, Stabilizer of iro...		Lus10031904 [exp]	14.1	0.8528
AT1G16610		RNPS1, SR45	arginine/serine-rich 45 (.1.2....		Lus10027383 [exp]	20.6	0.7622
AT1G15750		TPL, WSIP1	WUS-INTERACTING PROTEIN 1, TOP...		Lus10011481 [exp]	23.4	0.8581
AT3G06330			RING/U-box superfamily protein...		Lus10038632 [exp]	25.1	0.8054
AT3G01710			TPX2 (targeting protein for Xk...		Lus10014571 [exp]	27.1	0.8669
AT1G05830		SDG30, ATX2	SET DOMAIN PROTEIN 30, trithor...		Lus10026725 [exp]	29.9	0.8408

Compare expression of checked genes

Lus10026837 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.