Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G56270 291 / 3e-88 WRKY ATWRKY2, WRKY2, WRKY23 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 2, WRKY DNA-binding protein 2 (.1) AT4G26640 253 / 4e-76 WRKY ATWRKY20, WRKY20 WRKY family transcription factor family protein (.1.2) AT2G38470 243 / 3e-72 WRKY ATWRKY33, WRKY33 WRKY DNA-binding protein 33 (.1) AT1G13960 243 / 5e-72 WRKY WRKY4 WRKY DNA-binding protein 4 (.1.2) AT4G26440 242 / 3e-71 WRKY ATWRKY34, MSP3, WRKY34 MICROSPORE-SPECIFIC PROMOTER 3, WRKY DNA-binding protein 34 (.1) AT2G03340 239 / 8e-71 WRKY WRKY3 WRKY DNA-binding protein 3 (.1) AT2G04880 194 / 2e-54 WRKY ATWRKY1, ZAP1 zinc-dependent activator protein-1 (.1.2) AT2G37260 189 / 9e-54 WRKY DSL1, ATWRKY44, TTG2 TRANSPARENT TESTA GLABRA 2, DR. STRANGELOVE 1, WRKY family transcription factor family protein (.1.2) AT5G07100 145 / 8e-40 WRKY WRKY26 WRKY DNA-binding protein 26 (.1.2) AT3G01080 144 / 4e-37 WRKY ATWRKY58, WRKY58 WRKY DNA-binding protein 58 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020215 [exp] 922 / 0 AT5G56270 276 / 3e-84 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 2, WRKY DNA-binding protein 2 (.1) Lus10032887 [exp] 303 / 2e-92 AT5G56270 540 / 0.0 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 2, WRKY DNA-binding protein 2 (.1) Lus10027139 [exp] 297 / 4e-90 AT5G56270 528 / 1e-179 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 2, WRKY DNA-binding protein 2 (.1) Lus10016595 [exp] 271 / 5e-82 AT4G26640 556 / 0.0 WRKY family transcription factor family protein (.1.2) Lus10003769 [exp] 269 / 8e-81 AT4G26640 524 / 0.0 WRKY family transcription factor family protein (.1.2) Lus10012215 [exp] 251 / 7e-75 AT2G38470 393 / 2e-131 WRKY DNA-binding protein 33 (.1) Lus10001265 [exp] 249 / 2e-74 AT2G38470 394 / 2e-132 WRKY DNA-binding protein 33 (.1) Lus10030424 [exp] 244 / 5e-73 AT1G13960 421 / 7e-144 WRKY DNA-binding protein 4 (.1.2) Lus10043167 [exp] 245 / 9e-73 AT4G26640 473 / 9e-163 WRKY family transcription factor family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G086000 [exp] 516 / 9e-175 AT5G56270 299 / 3e-91 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 2, WRKY DNA-binding protein 2 (.1) Potri.019G053900 [exp] 412 / 6e-137 AT5G56270 154 / 5e-40 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 2, WRKY DNA-binding protein 2 (.1) Potri.011G169300 [exp] 337 / 4e-105 AT5G56270 588 / 0.0 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 2, WRKY DNA-binding protein 2 (.1) Potri.001G472800 [exp] 327 / 3e-101 AT5G56270 585 / 0.0 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 2, WRKY DNA-binding protein 2 (.1) Potri.001G361600 [exp] 266 / 2e-80 AT4G26640 540 / 0.0 WRKY family transcription factor family protein (.1.2) Potri.011G087900 [exp] 265 / 9e-80 AT4G26640 555 / 0.0 WRKY family transcription factor family protein (.1.2) Potri.013G153400 [exp] 262 / 2e-78 AT2G38470 329 / 5e-106 WRKY DNA-binding protein 33 (.1) Potri.019G123500 [exp] 254 / 2e-75 AT2G38470 299 / 3e-94 WRKY DNA-binding protein 33 (.1) Potri.010G163000 [exp] 250 / 5e-75 AT1G13960 431 / 5e-147 WRKY DNA-binding protein 4 (.1.2) Potri.006G133200 [exp] 241 / 8e-72 AT2G37260 330 / 3e-109 TRANSPARENT TESTA GLABRA 2, DR. STRANGELOVE 1, WRKY family transcription factor family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0274 [flax] [poplar] WRKY-GCM1 PF03106 [flax] [poplar] WRKY WRKY DNA -binding domain
Representative CDS sequence Show only first row Show all	>Lus10026838 pacid=23142961 polypeptide=Lus10026838 locus=Lus10026838.g ID=Lus10026838.BGIv1.0 annot-version=v1.0 ATGAAACATCAACGTTATCCGCCGCCTACCGATTCACTTGCTGGCTCTGATACCGCCGACGCCAGAGGTAGCATTGCCGATAGAAGAGCTGCCACCTGCG GCTTCAATGCTGACAGGATCAACACCCCGCGCTTCCGCACCAACATCAACACTCCCTTTGCTTCTTCTTCTTCTTCTTCTTCTTCCCCTTTCATCACCAT TCCTTCCGGCATCAGCCCCTCTGCTCTCCTCGATTCTCCTATTCTGCTCCCCAATCCTCAGCCTTCTCCAACAACTGGAACTTTTCCAGCACCTCTTCTC AGTTATGAAATAGCAGCACTCAACGGCAGTAGGGACCCGGATGCTAGTGCTGATACCTCCGCCTTCAGACTCAAGCCTCCTCTTAATGATTCCCATCCAA CATTGTCTAATTTCGATGATCAGGTATACACTGTTGGCCCGCAGGTCCTTGCTTTAGCAGATACACCCATGGACTTTGAATTTCCTGCAGAGTTCTCGAA AGAGGCAGCTGCAACAGTTTGTTCTAGGGATCTGGTCATCGATATGAAACCAGCAAACAGTATGACTCAACCCAACTTCATTGATGCACAGGTTTGTGGC TCAGACGTTCCTAGCAACCAAACCTCGACCAAAAGGGGGCCTATAAAGGGTAAAATTGATGGTATGCATACTGAAGACCAGAAAGGCACAATCATGGGAA CTGGAGGTGGGAGAACATCGGAAGATGGATACAGTTGGAGGAAGTATGGACAAAAGCAAGTGAAAGGTAGTGAATATCCAAGGAGCTATTACAAGTGTAC CAGTCCAAGTTGTCAGGTGAAGAAGAAGATAGACCGTTCACACGATGGTCAAATAACCGAAATAATCTACAAAGGTGCTCATAACCATCCTAAAACGCAG TCAGTTCGAAGAGCGGAGCCTGACTGGTGCCATGATGTGCCAGAGATTGATGATGGCAATGAAAGCTGTGTCAAAACTGAAGCTGGTTCCGGTCAGAAAA ATAATGAACCTGGGTCTGATTGGAGAGCTGAAGGTATGGAAAGGACATCTTCACCATCTGTTGTGACTGAGCTTTATGATCTGCTATCAACTGGCCTAGG AAAACCAGTGGTGACGGTTGAATCCGTTGGAACTCCAGAGCTTTCCTCCACAGTTATCAGTCACGAAGATGATGATGATGGGATAACTCAGGGGAGCATA TCAATTGGAGGTTACACCGATGAGGAAGAGTCTGATTCCAAAAGAAGAAAGACAGAGAGCTGCATGGTTGAGGCAAATATGACATCTAGGGCTGTCAGGG AACCAAGAGTCGTCGTCCAAATAGAGAGCGAAGTAGACATCCTGGATGATGGATATCGCTGGAGGAAGTATGGTCAAAAAGTTGTCAAAGGCAATCCAAA CCCGAGGAGTTATTACAAGTGCACAAGCCCCGGATGTACGGTGAGGAAGCATGTGGAGAGAGCCTCCCACAACCTGAAATATGTTATCACGACATACGAA GGGAAGCATAATCACCAAGTGCCAGTAGCTAGAACCGGGAACACCTTGAGCTCAAACAGTTGCAGTTTGTCCTCGGCACTCTCCAATCTACAGCCTGGAT CGGCATTAGCCAGAGGGCTCTCCAGCCTGAAACAAGAATCACAGGTGCAAAGATCATCATCATCGTCAGTATTCAATAACAGCGAGTATATGAGAAGCAG CAGCTTCAGTGGAAACTTGGTCAGTGAGATGAAGGTGGGAGGACCCTCACTTTATCCAATGAAGTTCCCTGCCGTACAGAGTAGCATGGCTTACGGTTCT TACGGGTTCAATTCCAACCGGACCACACCAGTCCATCTTCCGGGTTCCATGGCATCGCTTATCCCGCAGTTCCCCAGGTCCTCGCTGTCTTCGAACCTCC ACACATTGGGCGGCATCGAAATGTTGAATAATGGTAGTGGTATGGGCATGGGGATGAGTCTAATGGGTCAAGTTCATCAGCCTTACTTCCCAGCAGCTGG TGGTGGTCAGCAGTTGATGATGATGCGTAAGCAAGAGAGGAGAGATGATAACGTGTACAATTCTTCTAGCACATCCTCGTCGGTATTGAACCAACGCATT ATGGGGAATTTTGCATCCTAA
AA sequence Show only first row Show all	>Lus10026838 pacid=23142961 polypeptide=Lus10026838 locus=Lus10026838.g ID=Lus10026838.BGIv1.0 annot-version=v1.0 MKHQRYPPPTDSLAGSDTADARGSIADRRAATCGFNADRINTPRFRTNINTPFASSSSSSSSPFITIPSGISPSALLDSPILLPNPQPSPTTGTFPAPLL SYEIAALNGSRDPDASADTSAFRLKPPLNDSHPTLSNFDDQVYTVGPQVLALADTPMDFEFPAEFSKEAAATVCSRDLVIDMKPANSMTQPNFIDAQVCG SDVPSNQTSTKRGPIKGKIDGMHTEDQKGTIMGTGGGRTSEDGYSWRKYGQKQVKGSEYPRSYYKCTSPSCQVKKKIDRSHDGQITEIIYKGAHNHPKTQ SVRRAEPDWCHDVPEIDDGNESCVKTEAGSGQKNNEPGSDWRAEGMERTSSPSVVTELYDLLSTGLGKPVVTVESVGTPELSSTVISHEDDDDGITQGSI SIGGYTDEEESDSKRRKTESCMVEANMTSRAVREPRVVVQIESEVDILDDGYRWRKYGQKVVKGNPNPRSYYKCTSPGCTVRKHVERASHNLKYVITTYE GKHNHQVPVARTGNTLSSNSCSLSSALSNLQPGSALARGLSSLKQESQVQRSSSSSVFNNSEYMRSSSFSGNLVSEMKVGGPSLYPMKFPAVQSSMAYGS YGFNSNRTTPVHLPGSMASLIPQFPRSSLSSNLHTLGGIEMLNNGSGMGMGMSLMGQVHQPYFPAAGGGQQLMMMRKQERRDDNVYNSSSTSSSVLNQRI MGNFAS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G56270	WRKY	ATWRKY2, WRKY2,...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10026838 [exp]	0	1
AT4G24190		AtHsp90-7, HSP9...	SHEPHERD, HEAT SHOCK PROTEIN 9...		Lus10035109 [exp]	3.6	0.8543
AT5G65550			UDP-Glycosyltransferase superf...		Lus10028864 [exp]	7.1	0.8400
AT2G36960	MYB	TKI1	TSL-kinase interacting protein...		Lus10010230 [exp]	11.0	0.8286
AT5G63100			S-adenosyl-L-methionine-depend...		Lus10015621 [exp]	11.4	0.7361
AT1G67120			ATPases;nucleotide binding;ATP...		Lus10037616 [exp]	12.2	0.7917
AT4G02260		AT-RSH1, RSH1, ...	RELA-SPOT HOMOLOG 1, RELA/SPOT...		Lus10008756 [exp]	13.1	0.7809
AT3G49055			unknown protein		Lus10027489 [exp]	14.3	0.7062
AT5G14930		GENE101, SAG101	senescence-associated gene 101...		Lus10004841 [exp]	15.7	0.8312
AT4G13750		EMB2597, NOV	NO VEIN, EMBRYO DEFECTIVE 2597...		Lus10022572 [exp]	17.7	0.8187
AT1G61100			disease resistance protein (TI...		Lus10025112 [exp]	18.1	0.8023

Compare expression of checked genes

Lus10026838 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.