Plant FIBer expression Database

Lus10026839 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G02790 142 / 3e-45 C2H2ZnF zinc finger (C2H2 type) family protein (.1)
AT5G16470 138 / 2e-43 C2H2ZnF zinc finger (C2H2 type) family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10020216
[exp]
210 / 2e-71 AT3G02790 146 / 1e-46 zinc finger (C2H2 type) family protein (.1)
Lus10041105
[exp]
164 / 1e-53 AT3G02790 153 / 1e-49 zinc finger (C2H2 type) family protein (.1)
Lus10036432
[exp]
163 / 3e-53 AT3G02790 150 / 9e-49 zinc finger (C2H2 type) family protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.019G053500
[exp]
153 / 4e-49 AT3G02790 160 / 2e-52 zinc finger (C2H2 type) family protein (.1)
Potri.013G086400
[exp]
148 / 2e-47 AT3G02790 162 / 1e-53 zinc finger (C2H2 type) family protein (.1)
PFAM info
Representative CDS sequence
>Lus10026839 pacid=23142856 polypeptide=Lus10026839 locus=Lus10026839.g ID=Lus10026839.BGIv1.0 annot-version=v1.0
ATGACAGGAAAGGCGAAGCCGAAGAAGCACACGGCGAAGGAGATAGCGGCCAAGGTCGACGCCGCCACCACGAACAGAGGCGGAGGCAAAGCCGGATTAG
TTGACAGGACCGGCCTAACCAAAGGAGGCCATGCCAAATTCGAGTGCCCTCTCTGCAAGGTCACTGCTCCCGATATCAAATCCATGAAGATCCATCACGA
AGCTCGCCACCCTAAGCTCCCATTCGAGGAAGACAAGATCGTCAATCTCCACGCTTCTACCGCTGTCGCCACCGCTGCCCCCTCCGCTCCTGCTGCTGCT
GCTCCTGATACCTCTGGAAAGCCCCGCCCTGGAATCACTGCTGCTGCTGCTGATACCTCCGGCAAGCCACGTCCTGGAATCAGGGGAAGCTTGAAGAAGT
GA
AA sequence
>Lus10026839 pacid=23142856 polypeptide=Lus10026839 locus=Lus10026839.g ID=Lus10026839.BGIv1.0 annot-version=v1.0
MTGKAKPKKHTAKEIAAKVDAATTNRGGGKAGLVDRTGLTKGGHAKFECPLCKVTAPDIKSMKIHHEARHPKLPFEEDKIVNLHASTAVATAAPSAPAAA
APDTSGKPRPGITAAAADTSGKPRPGIRGSLKK

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G02790 C2H2ZnF zinc finger (C2H2 type) family... Lus10026839
[exp]
0 1
AT3G02790 C2H2ZnF zinc finger (C2H2 type) family... Lus10020216
[exp]
1.4 0.9150
AT5G13890 Family of unknown function (DU... Lus10041505
[exp]
4.5 0.8719
AT1G11360 Adenine nucleotide alpha hydro... Lus10037867
[exp]
6.2 0.8881
AT1G27310 NTF2A nuclear transport factor 2A (.... Lus10015772
[exp]
8.8 0.8339
AT2G38360 PRA1.B4 prenylated RAB acceptor 1.B4 (... Lus10017425
[exp]
11.1 0.8813
AT1G29790 S-adenosyl-L-methionine-depend... Lus10025384
[exp]
12.0 0.8717
AT3G22590 PHP, CDC73 PLANT HOMOLOGOUS TO PARAFIBROM... Lus10041198
[exp]
12.6 0.8467
AT2G26110 Protein of unknown function (D... Lus10024988
[exp]
12.8 0.8458
AT1G65270 unknown protein Lus10020224
[exp]
13.2 0.8261
AT4G36020 CSDP1 cold shock domain protein 1 (.... Lus10028449
[exp]
13.9 0.8272

Lus10026839 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.