Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G22400 917 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT4G40000 823 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G55920 80 / 3e-15 OLI2 OLIGOCELLULA 2, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT4G26600 77 / 2e-14 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT3G13180 62 / 1e-09 NOL1/NOP2/sun family protein / antitermination NusB domain-containing protein (.1) AT1G06560 50 / 6e-06 NOL1/NOP2/sun family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020217 [exp] 1531 / 0 AT2G22400 975 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10032368 [exp] 84 / 3e-16 AT4G26600 736 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10023095 [exp] 78 / 2e-14 AT4G26600 736 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10016622 [exp] 58 / 2e-08 AT3G13180 759 / 0.0 NOL1/NOP2/sun family protein / antitermination NusB domain-containing protein (.1) Lus10007337 [exp] 56 / 1e-07 AT1G06560 725 / 0.0 NOL1/NOP2/sun family protein (.1) Lus10020761 [exp] 52 / 3e-06 AT1G06560 714 / 0.0 NOL1/NOP2/sun family protein (.1) Lus10022523 [exp] 45 / 0.0002 AT3G13180 323 / 1e-107 NOL1/NOP2/sun family protein / antitermination NusB domain-containing protein (.1) Lus10028444 [exp] 45 / 0.0003 AT5G66180 534 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G096100 [exp] 1108 / 0 AT2G22400 1012 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.001G369600 [exp] 82 / 8e-16 AT4G26600 696 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.016G098850 [exp] 65 / 3e-12 AT2G22400 73 / 9e-16 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.001G368500 [exp] 57 / 4e-08 AT3G13180 770 / 0.0 NOL1/NOP2/sun family protein / antitermination NusB domain-containing protein (.1) Potri.005G204900 [exp] 55 / 2e-07 AT1G06560 758 / 0.0 NOL1/NOP2/sun family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01189 [flax] [poplar] Methyltr_RsmB-F 16S rRNA methyltransferase RsmB/F
Representative CDS sequence Show only first row Show all	>Lus10026840 pacid=23142905 polypeptide=Lus10026840 locus=Lus10026840.g ID=Lus10026840.BGIv1.0 annot-version=v1.0 ATGGGCGGTCGAGGGAGAGGCAACAGGTCTAGAACTCAACGGAAGCACTTCCGAGATGGCCGAGAGAATGTCTGGAAACGCTCTAAGTCTGATCCTTCCG GCGATACCGACGGCGCTGCTACTGCTGTCGCTGCGGAGAAACGTAGCTGGCAGCCTTTTGCCACTCAGAACGCTGCCTTCGATGACTACTACAAGGAGCA AGGAATCGTGTCGCTAGAGGAGTGGGATACTTTCATGGAAGTTCTTCGCAGCCCATTGCCGGCTGCTTTTAGAATAAACTCAAGTAGCCAGTTTTCAACA GATATTAGATTGCAACTGGAGAATGACTTTATGAAAACTCTTCGAGCTGAGGGCGCTGATGGTGTTGAAGTGGAGGTTGTCAAACCATTGCCTTGGTACC CTGATAATCTTGCTTGGCACTCAAATTTTTCTCGCATGCAGCTGAGGAAAAATCAAACTCTTGAGAGGTTCCATGAATTCTTGAAGCTAGAAAACGAAAT TGGAAACATCACTAGGCAGGAGGCGGTTAGCATGGTTCCACCACTTTTCCTCGATGTACGTCCAGAACATTTTATCCTTGATATGTGTGCGGCACCTGGT TCAAAAACATTTCAGCTGCTTGAGATTATATATCAATCAACCAAACCAGGATTACTTCCAGACGGAATGATCATAGCAAATGATCTTGATGTTCAAAGAT GTAACCTTCTCATTCACCAAACAAAGAGAATGTGCACCGCCAACCTGATTGTCACAAACAATGAGGCCCAACAGTTACCTGGCTGCCGCCTTAGCAAGGT TTTGCCTAAACATGAGAGAAATATGGGTCAACTGCTTTTTGATCGTGTCCTGTGCGATGTTCCCTGTAGTGGAGATGGCACCCTCCGCAAGGCTCCAGAT CTCTGGAGAAAATGGAGTTCGGGCATGGGAAATGGTCTTCACAACCTACAAATTCAAATAGCGATGCGTGAGGTAGATCTGAGATTGAGGATAATGAAGT TCCATTTCCTACTTGATATTTGTCAAGATTTTGTTAAATGCACCGTAAGTGTTGCTCTACATCTCGACCCTACTTACTCTGTCTTGCTTCTTGATACAGG TCTTGCCTTGTTAAAAGTTGGTGGGAAAATGGTATACTCAACTTGCTCAATGAATCCAGTTGAGAACGAGGCTGTTGTTGCAGAGATTTTAAGGAAGTGT AGAGGGACTGTTGAACTACTTGATGTGTCAAATGAACGTCCTGACCTTGTTCGCCGGCCTGGCCTAAGAAAGTGGAAGGTGTGTGACAAAGGTAATTGGT TAGCTTCACACAAAGATGTCTCCAAACAACGTCATTTCGGAGTTGTTCCCAGCATGTTTCCGTCTGGCCGAACGTATGTTGCTCCAAGTGAGAATGATAC TGAAAACGAGAATGGTGGTAATTCTGAGGATGCATTAACTTCAAACGATGGTTTAGATGAAGAAGCTTCTGATCTACCACTAGAACGCTGCATGAGGATA GTACCTCATGATCAGAACAGTGGGGCGTTTTTTATCGCTGTACTCCAGAAGGTCTCTCCTTTGCCAGCAATCCCAGAAAACCCCAAAAAACAGAAGAACT CGTCAACTAAAAAGGATGCGACGCAAGAAAAGATGTCAGATACAACAGCAGTTGAAGAAGATATTGATGCACAAGAGCTGAAGTCAGAAAATGATGTCAT GGAAACGGCGGCTTCTGAAGCTGTTTCAGATATTGATTTGGCAGATAATGAAGAAGATACAGTTCTGGTGGAAGCTGAAGCTGTTCCACGCGACGTGTCT TCTGAAAATGGTTTAGAAGAAGACGTGCCGGTACCTGTTGCTGTTGATGAGAAAAGTGATGCTGAGAAGGTTGTTGGGAAGCGGAAGTTGCAAATACAAG GAAGATGGAAAGGGGTGGATCCTGTCCTTTTCTTCAATGATGAAGCTACCATGAACAGTATAATTGATTTCTATGGTATTGACGAGTCATTTCCGTTCAA GGGCCATTTGATATCAAGAAACGTTGACAAGAACCATGTGAAGAGAATTTATTACGTCTCAAAGTCGGTGAAGGAAGTTCTTGAGCTCAACTTCCTTGTT GGCCAGCAGCTTAAGATTGCTTCAGTGGGCTTGAAAATGTTTGAACGGCAAACATCAAGAGAGGGAACCACTACTCCATGTTGTTTCCGGATATCTTCTG AGGGGCTGCCTTTGATTCTTCCTCACATCACCAAACAAATCTTATATGCATCAACGGTTGACTTTGTTAATCTTCTGAAGAACAAATCTATTAAATATGC CAATTTCGCCGATGCTGCCTTTGGGGAGAAGGCATCCAAGCTAATGATGGGTTGCTGTGTGATAGTGTTGAAAGATGATAAAGTAGCTTCGGATTCAGTG AAGGTAGATGCATCATCGATTGCCATAGGCTGCTGGAAAGGCAGGGGTAGTATGAGTGTGATGGTGACGGCCATCGATTGTCAGGAATTACTGGAAAGGC TTGCAGTTCGGATGGGTGACAAGAGCATTGCAGCAACAGCGGTCGATGTCCCGGCCCTGGGTGTAAATGGAGATGGGCAAGAAGAGATATTTGATGAGGC AACAGAATTTGCAGCAGCATAA
AA sequence Show only first row Show all	>Lus10026840 pacid=23142905 polypeptide=Lus10026840 locus=Lus10026840.g ID=Lus10026840.BGIv1.0 annot-version=v1.0 MGGRGRGNRSRTQRKHFRDGRENVWKRSKSDPSGDTDGAATAVAAEKRSWQPFATQNAAFDDYYKEQGIVSLEEWDTFMEVLRSPLPAAFRINSSSQFST DIRLQLENDFMKTLRAEGADGVEVEVVKPLPWYPDNLAWHSNFSRMQLRKNQTLERFHEFLKLENEIGNITRQEAVSMVPPLFLDVRPEHFILDMCAAPG SKTFQLLEIIYQSTKPGLLPDGMIIANDLDVQRCNLLIHQTKRMCTANLIVTNNEAQQLPGCRLSKVLPKHERNMGQLLFDRVLCDVPCSGDGTLRKAPD LWRKWSSGMGNGLHNLQIQIAMREVDLRLRIMKFHFLLDICQDFVKCTVSVALHLDPTYSVLLLDTGLALLKVGGKMVYSTCSMNPVENEAVVAEILRKC RGTVELLDVSNERPDLVRRPGLRKWKVCDKGNWLASHKDVSKQRHFGVVPSMFPSGRTYVAPSENDTENENGGNSEDALTSNDGLDEEASDLPLERCMRI VPHDQNSGAFFIAVLQKVSPLPAIPENPKKQKNSSTKKDATQEKMSDTTAVEEDIDAQELKSENDVMETAASEAVSDIDLADNEEDTVLVEAEAVPRDVS SENGLEEDVPVPVAVDEKSDAEKVVGKRKLQIQGRWKGVDPVLFFNDEATMNSIIDFYGIDESFPFKGHLISRNVDKNHVKRIYYVSKSVKEVLELNFLV GQQLKIASVGLKMFERQTSREGTTTPCCFRISSEGLPLILPHITKQILYASTVDFVNLLKNKSIKYANFADAAFGEKASKLMMGCCVIVLKDDKVASDSV KVDASSIAIGCWKGRGSMSVMVTAIDCQELLERLAVRMGDKSIAATAVDVPALGVNGDGQEEIFDEATEFAAA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G40000			S-adenosyl-L-methionine-depend...		Lus10026840 [exp]	0	1
AT2G22400			S-adenosyl-L-methionine-depend...		Lus10020217 [exp]	1.0	0.9701
AT5G61990			Pentatricopeptide repeat (PPR)...		Lus10036020 [exp]	4.0	0.9426
AT2G05120			Nucleoporin, Nup133/Nup155-lik...		Lus10001170 [exp]	4.5	0.9522
AT3G55160			unknown protein		Lus10007252 [exp]	5.5	0.9411
AT5G05680		EMB2789, MOS7	MODIFIER OF SNC1,7, EMBRYO DEF...		Lus10040194 [exp]	6.7	0.9287
AT3G55160			unknown protein		Lus10015366 [exp]	7.3	0.9452
AT2G38770		EMB2765	EMBRYO DEFECTIVE 2765, P-loop ...		Lus10016352 [exp]	8.9	0.9412
AT4G32700		TEB	TEBICHI, helicases;ATP-depende...		Lus10022115 [exp]	9.5	0.9344
AT5G09840			Putative endonuclease or glyco...		Lus10020866 [exp]	13.4	0.9327
AT1G09770	MYB	ATCDC5, AtMYBCD...	ARABIDOPSIS THALIANA MYB DOMAI...		Lus10034133 [exp]	14.3	0.9050

Compare expression of checked genes

Lus10026840 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.