Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16380 152 / 2e-46 Protein of unknown function, DUF538 (.1) AT3G07470 145 / 6e-44 Protein of unknown function, DUF538 (.1) AT3G07460 136 / 2e-40 Protein of unknown function, DUF538 (.1.2) AT1G61667 118 / 9e-34 Protein of unknown function, DUF538 (.1) AT5G54530 105 / 2e-28 Protein of unknown function, DUF538 (.1) AT5G19860 89 / 3e-22 Protein of unknown function, DUF538 (.1) AT1G55265 80 / 1e-18 Protein of unknown function, DUF538 (.1) AT4G02360 71 / 2e-15 Protein of unknown function, DUF538 (.1) AT4G02370 67 / 7e-14 Protein of unknown function, DUF538 (.1) AT1G02816 66 / 3e-13 Protein of unknown function, DUF538 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020218 [exp] 263 / 3e-90 AT5G16380 157 / 3e-49 Protein of unknown function, DUF538 (.1) Lus10019216 [exp] 154 / 6e-47 AT3G07470 185 / 5e-60 Protein of unknown function, DUF538 (.1) Lus10025861 [exp] 147 / 1e-43 AT3G07470 171 / 4e-54 Protein of unknown function, DUF538 (.1) Lus10038238 [exp] 143 / 5e-43 AT3G07460 162 / 4e-51 Protein of unknown function, DUF538 (.1.2) Lus10029538 [exp] 141 / 4e-42 AT3G07470 192 / 5e-63 Protein of unknown function, DUF538 (.1) Lus10039620 [exp] 141 / 7e-42 AT3G07470 181 / 4e-58 Protein of unknown function, DUF538 (.1) Lus10004300 [exp] 135 / 3e-40 AT3G07470 158 / 4e-50 Protein of unknown function, DUF538 (.1) Lus10007617 [exp] 112 / 5e-31 AT1G61667 175 / 8e-57 Protein of unknown function, DUF538 (.1) Lus10020075 [exp] 111 / 1e-30 AT1G61667 178 / 6e-58 Protein of unknown function, DUF538 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G238900 [exp] 157 / 2e-48 AT3G07470 193 / 1e-63 Protein of unknown function, DUF538 (.1) Potri.014G177800 [exp] 152 / 1e-46 AT3G07470 192 / 3e-63 Protein of unknown function, DUF538 (.1) Potri.011G032600 [exp] 102 / 3e-27 AT1G61667 177 / 1e-57 Protein of unknown function, DUF538 (.1) Potri.011G129900 [exp] 100 / 1e-26 AT5G54530 181 / 6e-59 Protein of unknown function, DUF538 (.1) Potri.001G410300 [exp] 100 / 1e-26 AT5G54530 179 / 2e-58 Protein of unknown function, DUF538 (.1) Potri.004G029600 [exp] 99 / 5e-26 AT1G61667 175 / 8e-57 Protein of unknown function, DUF538 (.1) Potri.003G217300 [exp] 92 / 1e-23 AT1G55265 139 / 2e-42 Protein of unknown function, DUF538 (.1) Potri.001G008240 [exp] 91 / 4e-23 AT1G55265 137 / 8e-42 Protein of unknown function, DUF538 (.1) Potri.001G008320 [exp] 89 / 3e-22 AT1G55265 135 / 4e-41 Protein of unknown function, DUF538 (.1) Potri.003G217200 [exp] 79 / 3e-18 AT5G19860 196 / 1e-64 Protein of unknown function, DUF538 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04398 [flax] [poplar] DUF538 Protein of unknown function, DUF538
Representative CDS sequence Show only first row Show all	>Lus10026841 pacid=23142823 polypeptide=Lus10026841 locus=Lus10026841.g ID=Lus10026841.BGIv1.0 annot-version=v1.0 ATGGCCACCCTGCGAAACCCCACCATTTCCCACTTCTCATTTCTCACCCTCTTCCTCTTCCTCCTCCTATCTTCCCTTCCGATACCAATCTCCGGGGCTT CCGAATTCACCGTCTACGACTACCTACATCAAAACGGCCTTCCGATCGGCCTCTTCCCCGAAGGCATAACCAACTTCTCCGTCGACCCAACCACGGGGCG CTTCCAGATAAACCTCACCCAGCCTTGCAACGTGAAGCTGCAGAATCAGCTTCACTACGATTTCAACATCTCCGGTCTATTATCATATGGCCGAATGGAA GAGATCTCCGGGATGTCCCAGCAGGAGCTGTTCCTTTGGTTCCCCGTGAAGGGGATTAGGGTTGATGACCCTGCGTCTGGCTTGATTCAATTCGATGTCG GGGTGGTGGATAAACAATTCACCTTGTCCACGTTTGAGATCCCTTCCCCTTGTACCGACGGCGATTACTCTTCTCCTTCACTTCCCCTTCTTCCGTTTCC TACTGGTTTCAGGTTTCGCCATCTCCATCATCTCTTACTAATTCGCTGTTTTTTTCACCTCATAGGGTATTGGTCTGCATTGATGAGCTCTAAAGGTGAT GAAAAGAAATGGATGGGAGCAGGGAAGCAGGATCAAGGCGTGCTGATGGCTGATTCATAG
AA sequence Show only first row Show all	>Lus10026841 pacid=23142823 polypeptide=Lus10026841 locus=Lus10026841.g ID=Lus10026841.BGIv1.0 annot-version=v1.0 MATLRNPTISHFSFLTLFLFLLLSSLPIPISGASEFTVYDYLHQNGLPIGLFPEGITNFSVDPTTGRFQINLTQPCNVKLQNQLHYDFNISGLLSYGRME EISGMSQQELFLWFPVKGIRVDDPASGLIQFDVGVVDKQFTLSTFEIPSPCTDGDYSSPSLPLLPFPTGFRFRHLHHLLLIRCFFHLIGYWSALMSSKGD EKKWMGAGKQDQGVLMADS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G16380			Protein of unknown function, D...		Lus10026841 [exp]	0	1
AT5G09310			unknown protein		Lus10041297 [exp]	2.0	0.7392
AT2G28105			unknown protein		Lus10016142 [exp]	4.2	0.7083
AT3G18200			nodulin MtN21 /EamA-like trans...		Lus10021200 [exp]	4.2	0.7664
					Lus10014189 [exp]	6.9	0.6882
AT2G34790		MEE23, EDA28	MATERNAL EFFECT EMBRYO ARREST ...		Lus10023363 [exp]	10.1	0.7354
					Lus10023658 [exp]	10.1	0.6473
AT4G11080		3xHMG-box1	3xHigh Mobility Group-box1, HM...		Lus10033954 [exp]	12.0	0.6831
AT3G07480			2Fe-2S ferredoxin-like superfa...		Lus10020390 [exp]	12.2	0.7068
					Lus10024103 [exp]	13.7	0.7335
AT2G47850	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10007941 [exp]	18.7	0.7250

Compare expression of checked genes

Lus10026841 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.