Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021601 [exp] 108 / 4e-29 ND / Lus10002802 [exp] 94 / 1e-23 ND / Lus10028090 [exp] 86 / 1e-20 ND / Lus10022121 [exp] 85 / 5e-20 ND / Lus10003415 [exp] 81 / 6e-19 ND / Lus10042417 [exp] 72 / 3e-15 ND / Lus10003414 [exp] 64 / 1e-12 ND / Lus10029530 [exp] 56 / 2e-09 ND / Lus10023790 [exp] 51 / 2e-07 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10026843 pacid=23142916 polypeptide=Lus10026843 locus=Lus10026843.g ID=Lus10026843.BGIv1.0 annot-version=v1.0 ATGATGGTGAATGAGTACTCCTATCCTCACGCAGTTCGTGAGTTCTACTGCACACTCGACATTGGCAAGTACACTTCCACCTCTCAGAAGGTGATCTCCT TCCACTTGGGAGGAAGGCTGCACACCGTGTCTCTGGACAACATTGCCAAGAACGCTCATCCATTTGTAGTTGTGGTGTCCATGGCGACAAAGATCCACAA GCTAATGCTTTGCCACATCCACTTGTTTGCTCGTCATGGTTTCTCGCACCGCTCGTTTTCCAGCTCTCTAGGTTCAATCACTAACCGAGACTTGTACATC TACTACTATTTGGAGAAGAGGATCGACATGCATTTGGGAGATTTGATTCTCACTCTCTTCAAGCAATTGCGGGCTACTCCCTGCATTCCATGCTTTATGG AGGAGCAGCAGAGTTCATATGCGAGAGCTCAGTACGAGGCACTACAGGATGAGGAGTTAAAGAGATCGCAGCCTGAGCAGTTGGGATACATCATGCAAGA TCTGAGTAGGTTGGAGAGCGATTTTGATGCTTTCAGAGATGTGACGGGCAGTGCTTTCCAAAGAGTTGAGGAGCAGATCCATATTGTTCAAATAGAGACA CATTGGATCCAAAAGACGCATGACTGGCAGACCGGCCATATGTTGTATTACCAGGATGTGTATTCAGGGTTCCTCAAAACGACTCCTGACTATCCACCAC CTCCACAACACCACTTCCAGGACACAGAAGCAGCTTATCCAGGATACTATCTCTACCAAAGTGAGGAGCCCAGCTACTATGGGTACTACCCCCACTTCTA G
AA sequence Show only first row Show all	>Lus10026843 pacid=23142916 polypeptide=Lus10026843 locus=Lus10026843.g ID=Lus10026843.BGIv1.0 annot-version=v1.0 MMVNEYSYPHAVREFYCTLDIGKYTSTSQKVISFHLGGRLHTVSLDNIAKNAHPFVVVVSMATKIHKLMLCHIHLFARHGFSHRSFSSSLGSITNRDLYI YYYLEKRIDMHLGDLILTLFKQLRATPCIPCFMEEQQSSYARAQYEALQDEELKRSQPEQLGYIMQDLSRLESDFDAFRDVTGSAFQRVEEQIHIVQIET HWIQKTHDWQTGHMLYYQDVYSGFLKTTPDYPPPPQHHFQDTEAAYPGYYLYQSEEPSYYGYYPHF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10026843 [exp]	0	1
AT1G76570			Chlorophyll A-B binding family...		Lus10005421 [exp]	3.3	0.7717
AT3G60070			Major facilitator superfamily ...		Lus10034394 [exp]	5.5	0.7307
AT3G46450			SEC14 cytosolic factor family ...		Lus10016575 [exp]	19.0	0.6000
AT2G44280			Major facilitator superfamily ...		Lus10019162 [exp]	25.7	0.6812
AT1G42990	bZIP	AtBZIP60	Bbasic region/leucine zipper m...		Lus10021534 [exp]	29.1	0.6929
AT2G36895			unknown protein		Lus10001393 [exp]	29.2	0.6654
AT5G03910		ABCB29, ATATH12	ARABIDOPSIS THALIANA ABC TRANS...		Lus10021349 [exp]	32.4	0.6834
AT2G17290		ATCPK6, ATCDPK3...	calcium dependent protein kina...		Lus10026559 [exp]	34.6	0.6620
AT5G10695			unknown protein		Lus10026229 [exp]	36.9	0.6632
AT3G10970			Haloacid dehalogenase-like hyd...		Lus10029053 [exp]	46.8	0.6238

Compare expression of checked genes

Lus10026843 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.