Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G36930 141 / 2e-37 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT1G72920 125 / 2e-34 Toll-Interleukin-Resistance (TIR) domain family protein (.1) AT5G17680 130 / 5e-34 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT1G72930 120 / 1e-33 TIR toll/interleukin-1 receptor-like (.1.2) AT1G72910 125 / 2e-33 Toll-Interleukin-Resistance (TIR) domain-containing protein (.1) AT1G72950 124 / 5e-33 Disease resistance protein (TIR-NBS class) (.1) AT1G72940 122 / 3e-32 Toll-Interleukin-Resistance (TIR) domain-containing protein (.1) AT1G72900 119 / 5e-31 Toll-Interleukin-Resistance (TIR) domain-containing protein (.1) AT1G72890 119 / 1e-30 Disease resistance protein (TIR-NBS class) (.1), Disease resistance protein (TIR-NBS class) (.2) AT5G18360 117 / 2e-29 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041606 [exp] 404 / 6e-143 AT5G36930 140 / 5e-37 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10027920 [exp] 298 / 6e-101 AT5G36930 139 / 3e-36 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10012063 [exp] 260 / 7e-87 AT5G36930 124 / 5e-34 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10041605 [exp] 182 / 2e-57 AT1G72940 93 / 3e-22 Toll-Interleukin-Resistance (TIR) domain-containing protein (.1) Lus10006929 [exp] 150 / 6e-44 AT1G72890 146 / 1e-39 Disease resistance protein (TIR-NBS class) (.1), Disease resistance protein (TIR-NBS class) (.2) Lus10004482 [exp] 150 / 1e-43 AT1G56540 111 / 2e-27 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10029921 [exp] 152 / 2e-43 AT5G36930 105 / 7e-26 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10029919 [exp] 145 / 2e-42 AT5G36930 105 / 5e-26 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10006928 [exp] 152 / 4e-42 AT5G36930 165 / 5e-43 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G001314 [exp] 154 / 1e-45 AT5G36930 183 / 1e-52 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G019710 [exp] 157 / 3e-44 AT5G36930 445 / 2e-144 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G019053 [exp] 160 / 4e-44 AT5G36930 655 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002568 [exp] 154 / 3e-43 AT5G36930 439 / 2e-142 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.013G096849 [exp] 146 / 3e-43 AT5G36930 167 / 4e-48 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.017G105501 [exp] 145 / 5e-43 AT5G36930 158 / 4e-45 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G016425 [exp] 155 / 1e-42 AT5G36930 650 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.013G098100 [exp] 144 / 1e-42 AT5G36930 159 / 1e-45 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G017082 [exp] 155 / 2e-42 AT5G36930 638 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G003285 [exp] 154 / 4e-42 AT5G36930 640 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0173 [flax] [poplar] STIR PF01582 [flax] [poplar] TIR TIR domain
Representative CDS sequence Show only first row Show all	>Lus10026845 pacid=23142936 polypeptide=Lus10026845 locus=Lus10026845.g ID=Lus10026845.BGIv1.0 annot-version=v1.0 ATGGCTTTCAGGTCAGATCCGCCGTTCGCCGCCGCACTAATGCTACTTCTCCTTTTACTTTTCAATTTCATAACCCTACCGGCCAACGCCAAAGCCCATT CCTTCGGACCAAACAACCGCCGCCGTCACCATCACCCAGCCGCCGCCAAAATCCGACATTTCCCCGTTCCGCCGCCTCCTCCAGCGACGCCGTGGCGTCA CCACGTGTTCCTAAATTTCCGGGGGTTAGAAATCCGCCACACTTTCAGCGACCATCTCTACTATGCTCTGGTACGGAGAGGAGTGAAGGCCTTTCGCGAC GACCATGACCTCCCCCGCGGAGAAAACATCACGGAGGCAATCCCACGCGCCATTGAGGAGTCCAGGATGTCGATTGTTGTTCTGTCGAGGGGGTACGCCT CCTCGGAGTGGTGCTTGGACGAGCTTGTGAAGATTATGGAGGCCGCCAAGGACAAGCGTGCACACCACCAGACTTTCCCCGTTTTCTACAAAGTATCCCC CGACGAAGTCTCCGACCAGTCATCCGGCTGCTACAAGGAAGACTTCGATCTGCACAAGAGAAAGTTCAGCTACGAAAGAGTGGACAATTGGCGCCACGCG CTTACTTCCATTGCCGATGTTTCCGGCTGGGAAATCGCTCCTAATGGCCACAGATCGGAAGCAGAAATGGTTGAGACTATAGCCAATAGCATAGTATTGA AGGTCCACCAGCTTGCTCGGTTCAAATCCGAATCCGAGTCGAATCAGAGTGAACGGCCGGCGTTTGTTCCTGCTTTCCGAGCGCCGGAGGGAGCATTAGA TGATGATGATGAGCAACCTTCTTCATCCTCTCTGCTGATGGTAGGGTTAGGTTGA
AA sequence Show only first row Show all	>Lus10026845 pacid=23142936 polypeptide=Lus10026845 locus=Lus10026845.g ID=Lus10026845.BGIv1.0 annot-version=v1.0 MAFRSDPPFAAALMLLLLLLFNFITLPANAKAHSFGPNNRRRHHHPAAAKIRHFPVPPPPPATPWRHHVFLNFRGLEIRHTFSDHLYYALVRRGVKAFRD DHDLPRGENITEAIPRAIEESRMSIVVLSRGYASSEWCLDELVKIMEAAKDKRAHHQTFPVFYKVSPDEVSDQSSGCYKEDFDLHKRKFSYERVDNWRHA LTSIADVSGWEIAPNGHRSEAEMVETIANSIVLKVHQLARFKSESESNQSERPAFVPAFRAPEGALDDDDEQPSSSSLLMVGLG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G36930			Disease resistance protein (TI...		Lus10026845 [exp]	0	1
					Lus10032968 [exp]	8.5	0.8822
AT1G08650		ATPPCK1, PPCK1	phosphoenolpyruvate carboxylas...		Lus10042560 [exp]	10.3	0.7208
					Lus10026821 [exp]	11.3	0.6934
AT1G68360	C2H2ZnF		C2H2 and C2HC zinc fingers sup...		Lus10029204 [exp]	11.6	0.8284
AT5G60440	MADS	AGL62	AGAMOUS-like 62 (.1)		Lus10003481 [exp]	12.2	0.8819
AT1G24140			Matrixin family protein (.1)		Lus10008449 [exp]	13.0	0.7592
AT3G03550			RING/U-box superfamily protein...		Lus10009264 [exp]	14.3	0.7269
					Lus10006296 [exp]	14.8	0.8812
AT5G40690			unknown protein		Lus10025381 [exp]	15.0	0.7879
AT2G36190		ATCWINV4	cell wall invertase 4 (.1)		Lus10014217 [exp]	17.1	0.8812

Compare expression of checked genes

Lus10026845 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.