Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17440 451 / 2e-156 LUC7 related protein (.1) AT3G03340 440 / 4e-152 UNE6 unfertilized embryo sac 6, LUC7 related protein (.1) AT5G51410 81 / 2e-16 LUC7 N_terminus domain-containing protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020225 [exp] 519 / 4e-179 AT3G03340 516 / 1e-179 unfertilized embryo sac 6, LUC7 related protein (.1) Lus10027212 [exp] 77 / 3e-15 AT5G51410 380 / 2e-132 LUC7 N_terminus domain-containing protein (.1.2.3) Lus10038924 [exp] 75 / 1e-14 AT5G51410 382 / 3e-133 LUC7 N_terminus domain-containing protein (.1.2.3) Lus10031156 [exp] 69 / 2e-12 AT5G51410 360 / 1e-124 LUC7 N_terminus domain-containing protein (.1.2.3) Lus10031732 [exp] 67 / 8e-12 AT5G51410 381 / 1e-132 LUC7 N_terminus domain-containing protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G084800 [exp] 489 / 1e-171 AT5G17440 473 / 2e-166 LUC7 related protein (.1) Potri.019G055000 [exp] 474 / 1e-165 AT5G17440 438 / 6e-153 LUC7 related protein (.1) Potri.003G109000 [exp] 67 / 5e-12 AT5G51410 345 / 2e-118 LUC7 N_terminus domain-containing protein (.1.2.3) Potri.001G124300 [exp] 66 / 1e-11 AT5G51410 350 / 2e-120 LUC7 N_terminus domain-containing protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03194 [flax] [poplar] LUC7 LUC7 N_terminus
Representative CDS sequence Show only first row Show all	>Lus10026846 pacid=23142955 polypeptide=Lus10026846 locus=Lus10026846.g ID=Lus10026846.BGIv1.0 annot-version=v1.0 ATGGATGCGATGAGGAAACAGCTCGATGTGCTCATGGGAGCCAATCGCAACGGTGACGTCAGGGAGGTCAATCGGAAGTACTTCGATCGTGATGTTTGCC GCATGTACTTGGTCGGCCTGTGTCCTCACGAGCTATTCCAGTTGACGAAAATGGATATGGGTCCTTGCCCAAAAGTCCACTCGTTGCAGCTGAGGAAAGA ATATGAAGAAGCTAGGGCAAAGGGTGTTGATAACTACGACCGAGAACTGGAAGATGTAATTGATAGACTCATAGTCGAGTGTGACAAGAAGATTGGTAGA GCACTCAAACGTCTTGATGATGAAGATGATGCAAAGGCTGCCATTGCAATATCTGTTTCTGAGGTTACTCAGACTCCAGAGGTGATTGAGTTATCTAGAC AGATCAGGGAAAAACTGAAAGAAGTTGATAAACATGATCTTGAAGGCAAGACAGACTCCAAGATCCAAACTCTTGAAGAGGTTGAAAAACTCAGAAGTGA AAGAGCAGAGAAGCAGTCTGCACTTCTTCTGGAAGCTTTTAATAAAGATAGGGCACCATTCCCCCAGCCCCTGCCAAATCCACCTCCACTGGCAGCAATG CCTGCTGCAGCTCCAGATCCACGTACACAAGAAATGATAAACGAGAAGCTGAAGAAAGCAGAGGATCTTGGTGAGAAAGGGATGGTAGATGAAGCCCAAA AAGCCTTGGAAGAGGCTGAAGCACTCAAGAAGCTGCCTGCCAGGCAGGACCCAACAGTCGATAACTCCAAGTATACAGCTGCAGATGTTCGCATTACTGA TCAGAAGCTCCGTGTTTGTGACATTTGTGGAGCATTTTTGAGCGTGTATGATAGTGACCGACGGTTAGCTGATCATTTTGGAGGGAAGCTACATCTAGGC TATATACAAATTCGTGAAAAGATTGCTGAGCTTCAGGAAGAAAAAAACAAGTTCAGGAAAGTTGAGCGTAATGATGAACGAAGGTTTGATCCATTTTCTC TGAAAAACTTGTATAAAATTAAGTCAAAGGATTACCTGCCAGATCCAAAGATCGGAGTAAGGAGGCTGACCGAGAACCTAGTAGGGATCGGGACAGAGGT AATAGCCGTGACCGGGGCAGTGACAGGGGAAGCAGAGACTATGATCGCAGAAGCAGAGATCGTGACAGGTATCATGATCGGGAACGTGACAGAGATTCAG ATCGCTCTCGCGGTTATGAAAGAAGTCGTAGAAGGTCGCGATCTCAAGAACGCTCCAGGGATTATGACCGCCACAGGTAGTTTCTCTGATCCACAAGTTT GGCCTCTGTTCCTACTTGTGGCAGTGTCTTATTGTTTTGGAAAATTCGTACTCGCTGCTCCAAATATCTTGGAGAGATCAATTAAGTTATCAGTTACAAT GGCTGCGGGTGGTGGTTGCTTGTGGCTTAGAGTGCACGATGATGGGTTCTGGCTGCCGTTGATCACGATGTCCCCAACGTATTTCTTCGGAGCTTTGAGA CCTTGA
AA sequence Show only first row Show all	>Lus10026846 pacid=23142955 polypeptide=Lus10026846 locus=Lus10026846.g ID=Lus10026846.BGIv1.0 annot-version=v1.0 MDAMRKQLDVLMGANRNGDVREVNRKYFDRDVCRMYLVGLCPHELFQLTKMDMGPCPKVHSLQLRKEYEEARAKGVDNYDRELEDVIDRLIVECDKKIGR ALKRLDDEDDAKAAIAISVSEVTQTPEVIELSRQIREKLKEVDKHDLEGKTDSKIQTLEEVEKLRSERAEKQSALLLEAFNKDRAPFPQPLPNPPPLAAM PAAAPDPRTQEMINEKLKKAEDLGEKGMVDEAQKALEEAEALKKLPARQDPTVDNSKYTAADVRITDQKLRVCDICGAFLSVYDSDRRLADHFGGKLHLG YIQIREKIAELQEEKNKFRKVERNDERRFDPFSLKNLYKIKSKDYLPDPKIGVRRLTENLVGIGTEVIAVTGAVTGEAETMIAEAEIVTGIMIGNVTEIQ IALAVMKEVVEGRDLKNAPGIMTATGSFSDPQVWPLFLLVAVSYCFGKFVLAAPNILERSIKLSVTMAAGGGCLWLRVHDDGFWLPLITMSPTYFFGALR P

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G17440			LUC7 related protein (.1)		Lus10026846 [exp]	0	1
AT3G50670		U1SNRNP, U1-70K	U1 small nuclear ribonucleopro...		Lus10026026 [exp]	1.7	0.8543
AT2G21710		EMB2219	embryo defective 2219, Mitocho...		Lus10026342 [exp]	4.0	0.8057
					Lus10024697 [exp]	4.2	0.8318
AT5G11470			bromo-adjacent homology (BAH) ...		Lus10037903 [exp]	5.0	0.8599
AT2G26200			S-adenosyl-L-methionine-depend...		Lus10024993 [exp]	6.5	0.8580
AT5G64930		HYS1, CPR5	HYPERSENESCENCE 1, CONSTITUTIV...		Lus10016818 [exp]	6.5	0.7722
AT3G49000			RNA polymerase III subunit RPC...		Lus10012787 [exp]	6.7	0.8057
AT3G47630			unknown protein		Lus10024227 [exp]	7.9	0.8256
AT2G19490			recA DNA recombination family ...		Lus10021585 [exp]	10.1	0.8042
AT5G50840			unknown protein		Lus10040383 [exp]	12.8	0.8396

Compare expression of checked genes

Lus10026846 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.