Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10110 218 / 1e-73 MEE67 maternal effect embryo arrest 67, Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1) AT1G18320 206 / 3e-69 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1) AT5G55510 56 / 9e-10 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1) AT4G26670 55 / 1e-09 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1) AT2G37410 42 / 5e-05 ATTIM17-2 TRANSLOCASE OF THE INNER MEMBRANE 17, translocase inner membrane subunit 17-2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020223 [exp] 263 / 2e-91 AT3G10110 229 / 8e-78 maternal effect embryo arrest 67, Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1) Lus10043170 [exp] 57 / 3e-10 AT4G26670 220 / 5e-73 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1) Lus10032577 [exp] 57 / 3e-10 AT4G26670 221 / 1e-73 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G076400 [exp] 223 / 2e-75 AT3G10110 194 / 1e-63 maternal effect embryo arrest 67, Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1) Potri.001G281200 [exp] 223 / 3e-75 AT3G10110 205 / 4e-68 maternal effect embryo arrest 67, Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1) Potri.011G088500 [exp] 56 / 5e-10 AT5G55510 252 / 1e-85 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1) Potri.001G360300 [exp] 56 / 1e-09 AT5G55510 254 / 2e-86 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1) Potri.008G176500 [exp] 40 / 0.0002 AT2G37410 228 / 1e-75 TRANSLOCASE OF THE INNER MEMBRANE 17, translocase inner membrane subunit 17-2 (.1.2) Potri.018G087900 [exp] 39 / 0.001 AT2G37410 227 / 3e-75 TRANSLOCASE OF THE INNER MEMBRANE 17, translocase inner membrane subunit 17-2 (.1.2) Potri.006G164980 [exp] 39 / 0.001 AT2G37410 234 / 3e-78 TRANSLOCASE OF THE INNER MEMBRANE 17, translocase inner membrane subunit 17-2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02466 [flax] [poplar] Tim17 Tim17/Tim22/Tim23/Pmp24 family
Representative CDS sequence Show only first row Show all	>Lus10026848 pacid=23142928 polypeptide=Lus10026848 locus=Lus10026848.g ID=Lus10026848.BGIv1.0 annot-version=v1.0 ATGGCTGAAAGAGGTGAATCGAACAACAATAGCGGATCTCAAAGCTCAGAAACGAAGATCGAGCCGTTCAGGATGCCGTCGGTGGAGGAGATAAGAGCGC AGGAAGTGTGGAACAACTGCGCGATACGGAGCGCCTTCAGCGGCGTCATCGGCGGAGGGCTGGGAATCTTCATGGGGTTCCTCCTGGGAGCGCTGGACAA TCCGTTGATGCACGATCCGGACATGAGCGCCAAACAGCAAATCGTGTTCACTGCGAAGCAGATGGGGCGCAGGAGTTGGAGTAACTGCAAGGCCTTCGCG GTGATGGGGCTTGTGTTCTCCGCCGCCGAGTGCGTCGTGGAGAAGGCCCGTGCCAAACACGATGTCACTAATTCGGCGATCGCCGGGTGCGTCACCGGCG GCGCCATGTCTGCAAAAGCTGGGCCGAAAGCGGCTTGTGTTGGCTGTGTGGGATTCTCTGCGTTCTCAGTATTGATCGAGAAGTTCTTAGATAGGCATAC TTGA
AA sequence Show only first row Show all	>Lus10026848 pacid=23142928 polypeptide=Lus10026848 locus=Lus10026848.g ID=Lus10026848.BGIv1.0 annot-version=v1.0 MAERGESNNNSGSQSSETKIEPFRMPSVEEIRAQEVWNNCAIRSAFSGVIGGGLGIFMGFLLGALDNPLMHDPDMSAKQQIVFTAKQMGRRSWSNCKAFA VMGLVFSAAECVVEKARAKHDVTNSAIAGCVTGGAMSAKAGPKAACVGCVGFSAFSVLIEKFLDRHT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G10110		MEE67	maternal effect embryo arrest ...		Lus10026848 [exp]	0	1
AT4G36130			Ribosomal protein L2 family (....		Lus10025966 [exp]	9.6	0.8269
AT1G03530		ATNAF1	nuclear assembly factor 1 (.1)		Lus10024956 [exp]	10.4	0.8358
AT3G49910			Translation protein SH3-like f...		Lus10019283 [exp]	13.0	0.8485
AT1G65030			Transducin/WD40 repeat-like su...		Lus10025803 [exp]	13.7	0.8094
AT3G49080			Ribosomal protein S5 domain 2-...		Lus10014970 [exp]	20.5	0.8183
AT4G35490		MRPL11	mitochondrial ribosomal protei...		Lus10035432 [exp]	26.2	0.8245
AT4G28210		EMB1923	embryo defective 1923 (.1)		Lus10033723 [exp]	31.5	0.8179
AT3G57490			Ribosomal protein S5 family pr...		Lus10014909 [exp]	33.8	0.8146
AT4G32430			Pentatricopeptide repeat (PPR)...		Lus10017032 [exp]	41.3	0.8048
AT2G31240			Tetratricopeptide repeat (TPR)...		Lus10033883 [exp]	45.1	0.8006

Compare expression of checked genes

Lus10026848 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.