Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08450 565 / 0 AtCRT3, PSL1, EBS2, CRT3 PRIORITY IN SWEET LIFE 1, EMS-MUTAGENIZED BRI1 SUPPRESSOR 2, A. thaliana calreticulin 3, calreticulin 3 (.1.2.3) AT1G56340 444 / 8e-152 AtCRT1a, CRT1 calreticulin 1a (.1.2) AT1G09210 443 / 2e-151 AtCRT1b calreticulin 1b (.1) AT5G61790 206 / 5e-59 CNX1, ATCNX1 calnexin 1 (.1) AT1G65290 181 / 3e-54 MTACP2 mitochondrial acyl carrier protein 2 (.1) AT5G07340 180 / 2e-49 Calreticulin family protein (.1.2) AT2G44620 124 / 1e-33 MTACP1, MTACP-1 mitochondrial acyl carrier protein 1 (.1) AT5G47630 86 / 1e-19 MTACP3 mitochondrial acyl carrier protein 3 (.1.2) AT1G54580 62 / 2e-11 ACP2 acyl carrier protein 2 (.1) AT5G36280 60 / 2e-11 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020222 [exp] 751 / 0 AT1G08450 586 / 0.0 PRIORITY IN SWEET LIFE 1, EMS-MUTAGENIZED BRI1 SUPPRESSOR 2, A. thaliana calreticulin 3, calreticulin 3 (.1.2.3) Lus10010924 [exp] 466 / 9e-159 AT1G56340 621 / 0.0 calreticulin 1a (.1.2) Lus10031410 [exp] 449 / 2e-153 AT1G56340 621 / 0.0 calreticulin 1a (.1.2) Lus10010923 [exp] 446 / 3e-151 AT1G56340 616 / 0.0 calreticulin 1a (.1.2) Lus10031409 [exp] 447 / 6e-151 AT1G56340 621 / 0.0 calreticulin 1a (.1.2) Lus10020221 [exp] 265 / 2e-86 AT1G65290 183 / 4e-61 mitochondrial acyl carrier protein 2 (.1) Lus10043021 [exp] 192 / 1e-53 AT5G61790 793 / 0.0 calnexin 1 (.1) Lus10032521 [exp] 190 / 6e-53 AT5G61790 794 / 0.0 calnexin 1 (.1) Lus10043348 [exp] 121 / 2e-32 AT2G44620 186 / 1e-62 mitochondrial acyl carrier protein 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G055200 [exp] 620 / 0 AT1G08450 569 / 0.0 PRIORITY IN SWEET LIFE 1, EMS-MUTAGENIZED BRI1 SUPPRESSOR 2, A. thaliana calreticulin 3, calreticulin 3 (.1.2.3) Potri.007G131500 [exp] 596 / 0 AT1G08450 619 / 0.0 PRIORITY IN SWEET LIFE 1, EMS-MUTAGENIZED BRI1 SUPPRESSOR 2, A. thaliana calreticulin 3, calreticulin 3 (.1.2.3) Potri.017G026300 [exp] 578 / 0 AT1G08450 615 / 0.0 PRIORITY IN SWEET LIFE 1, EMS-MUTAGENIZED BRI1 SUPPRESSOR 2, A. thaliana calreticulin 3, calreticulin 3 (.1.2.3) Potri.005G015100 [exp] 442 / 3e-151 AT1G56340 566 / 0.0 calreticulin 1a (.1.2) Potri.013G009500 [exp] 436 / 5e-149 AT1G09210 579 / 0.0 calreticulin 1b (.1) Potri.019G055300 [exp] 204 / 5e-63 AT1G65290 196 / 6e-66 mitochondrial acyl carrier protein 2 (.1) Potri.013G084500 [exp] 199 / 3e-61 AT1G65290 188 / 5e-63 mitochondrial acyl carrier protein 2 (.1) Potri.015G109200 [exp] 192 / 9e-54 AT5G61790 710 / 0.0 calnexin 1 (.1) Potri.012G111100 [exp] 184 / 9e-51 AT5G61790 677 / 0.0 calnexin 1 (.1) Potri.001G070600 [exp] 143 / 2e-36 AT5G61790 582 / 0.0 calnexin 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0004 [flax] [poplar] Concanavalin PF00262 [flax] [poplar] Calreticulin Calreticulin family CL0314 [flax] [poplar] PP-binding PF00550 [flax] [poplar] PP-binding Phosphopantetheine attachment site
Representative CDS sequence Show only first row Show all	>Lus10026849 pacid=23142899 polypeptide=Lus10026849 locus=Lus10026849.g ID=Lus10026849.BGIv1.0 annot-version=v1.0 ATGGCGGCGGCCAGAGGAATTTTGCTCAAGCACCTCCGAGTTAAGGTGCAACCCTTACCCCAAATCCCTAACACCAGCAATGGCCTCTTCAGTCTCTCTT TCAATTCCGTACTGCGCCGATTCTCCGAGGAGGTTAAGGGCAACTTCCTTGACAAATCGGAAGTTACAGATCGTGTCGTCAATTGTGTCAAGAACTTCCA GAAGGTCGATGCCTCCAAGGTAACCACCAATGCTCATTTCCAGAATGACCTTGGGTTGGATAGTTTAGATACTGTGGAGATTGTGATGGCCCTTGAAGAA GAGTTTGGATTCGAGATACCAGATAATGAGGCAGACAAGATCAATACTATCAGTCTTGCTGTGGACTATATAGCTTCACACCCTCAAGCAAAGGGTTACG TGGGGCATGGCCATTGGTCAGGCGGACACCATTTGCACAGGGGTGGAAATGCAAATTCCAACAGAATGTGGGGGCAATTGTTTAAGCCGAGGTGTATTAA TAACACTGAGTTTCGAACTGTTGTTAGCAACCAACTAGAACCTTCTCTTTCTTTTTCTTTTGGCGAGGCAATGGCGGAGGATTACCTTAACGCCAATCAC TATCATTTGCTTACACTTCCGCTGCTTCTTCTCTTCCTCTGCTCGGCTCTCCAGTTCTCAGCATCCGAGGTCATCTTTGAAGAACGATTCGACGAGGGTT GGCAGAGTAGATGGGTGAGATCGGATTGGAAAAGAAGTGAAGGCAAAGCTGGAACGTTCAAACACACTGCTGGAAAGTGGCATGGTGATCCCGATGACAA GGGCAAGTGGATCCAGACTACCACTGATGCCAGGCATTTTGCCATATCTGCCAAGATACCTGAATTCAACAACAGTGGCAGAACCTTGGTCCTCCAGTAC TCGATAAGGTTGGAGCAGGACATTGAGTGTGGCGGTGGATACATTAAGCTTCTCTCTGGATATGTAAATCAGAAGAAGTTTGGTGGAGATACTCCTTATA GCGTGATGTTTGGTCCAGACATATGCGGCACACAAAAAAAGCAGCTCCATCTTATAGTCTCTTACCAAGGACAGAATTATCCCATTAAGAAGGAGCTGGA GTGTGAAACTGACAAACTGACTCATTTCTACACATTTATTATGAGGCCGGATGCTTCTTATAGCATCCTAATTGATGGACGAGAAAAGGATTCTGGAAGC TTGTACACAGATTGGGATATTTTACCTCCGCGGAAAATTAGAGCTGTCAAGGCCAAGAAGCCTGCTGACTGGGATGATAGAGAGTATATTGATGATCCTA ATGCTGTCAAACCTAAGGGATATGATTCTATTCCAAAAGAGATTTCTGACCCAAATGTTAAGGAGCCTGACGATTGGGATGAAGAAGAGAATGGCATCTG GAGACCACCAAGGATACCAAATCCAGCTTATAAAGGGCCATGGAGACCCAAGAGAATCAAGAACCCCAATTACAAAGGAAAGTGGAAGATTCCTTACATT GATAACCCAGAGTTTGAAGATGACCCAGATATTTATGTGCTCAAACCAATCAAATATGTGGGGATTGAAGTTTGGCAGGTGAAGGCAGGCTCAGTGTTCG ACAACGTTTTGATATGTGATGATCCAGAGTATGCAAAAGAAGTTGTACAAGATATATTGTCCAACAGGGAGATTGAGAAGGATGCTTTTGAGGAGGCAGA GAAAATTAGGAGAGCTCGGGAAGAAGAGGAAGCTCAAAGAGCTCGAGAGGAAGGCGAAAGAAGAAGGAAAGAACGTGGGTATGACCGAAGCCACCGCGAC AGATACAAGGACAAATACAGGAAGGTTAGTATATAA
AA sequence Show only first row Show all	>Lus10026849 pacid=23142899 polypeptide=Lus10026849 locus=Lus10026849.g ID=Lus10026849.BGIv1.0 annot-version=v1.0 MAAARGILLKHLRVKVQPLPQIPNTSNGLFSLSFNSVLRRFSEEVKGNFLDKSEVTDRVVNCVKNFQKVDASKVTTNAHFQNDLGLDSLDTVEIVMALEE EFGFEIPDNEADKINTISLAVDYIASHPQAKGYVGHGHWSGGHHLHRGGNANSNRMWGQLFKPRCINNTEFRTVVSNQLEPSLSFSFGEAMAEDYLNANH YHLLTLPLLLLFLCSALQFSASEVIFEERFDEGWQSRWVRSDWKRSEGKAGTFKHTAGKWHGDPDDKGKWIQTTTDARHFAISAKIPEFNNSGRTLVLQY SIRLEQDIECGGGYIKLLSGYVNQKKFGGDTPYSVMFGPDICGTQKKQLHLIVSYQGQNYPIKKELECETDKLTHFYTFIMRPDASYSILIDGREKDSGS LYTDWDILPPRKIRAVKAKKPADWDDREYIDDPNAVKPKGYDSIPKEISDPNVKEPDDWDEEENGIWRPPRIPNPAYKGPWRPKRIKNPNYKGKWKIPYI DNPEFEDDPDIYVLKPIKYVGIEVWQVKAGSVFDNVLICDDPEYAKEVVQDILSNREIEKDAFEEAEKIRRAREEEEAQRAREEGERRRKERGYDRSHRD RYKDKYRKVSI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G08450		AtCRT3, PSL1, E...	PRIORITY IN SWEET LIFE 1, EMS-...		Lus10026849 [exp]	0	1
AT4G26780		MGE2, AR192	mitochondrial GrpE 2, Co-chape...		Lus10043180 [exp]	3.5	0.8058
AT4G36420			Ribosomal protein L12 family p...		Lus10041783 [exp]	4.0	0.7626
AT1G07400			HSP20-like chaperones superfam...		Lus10040722 [exp]	7.3	0.8283
AT1G11840		ATGLX1	glyoxalase I homolog (.1.2.3.4...		Lus10002943 [exp]	8.1	0.8092
AT4G10250		ATHSP22.0	HSP20-like chaperones superfam...		Lus10042408 [exp]	9.4	0.7896
AT3G07090			PPPDE putative thiol peptidase...		Lus10038168 [exp]	11.4	0.8232
AT2G02050			NADH-ubiquinone oxidoreductase...		Lus10035094 [exp]	17.5	0.7682
AT2G29500			HSP20-like chaperones superfam...		Lus10016458 [exp]	20.3	0.7933
					Lus10003882 [exp]	21.7	0.6934
AT4G02450			HSP20-like chaperones superfam...		Lus10000340 [exp]	22.4	0.7988

Compare expression of checked genes

Lus10026849 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.