Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G43945 328 / 1e-113 unknown protein AT3G59870 325 / 2e-112 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020220 [exp] 483 / 5e-175 AT2G43945 333 / 1e-115 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G084300 [exp] 371 / 8e-131 AT2G43945 381 / 2e-134 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10026850 pacid=23142863 polypeptide=Lus10026850 locus=Lus10026850.g ID=Lus10026850.BGIv1.0 annot-version=v1.0 ATGTCTGCTGTCACTGGGTTAGCCACCATGAAGCTCTTGTTAACTACCTCCGCCTCCCCCAACTCTTCTTCTCTTTTCTCTGCTTCTTCTTCTTCTTCTG CATCCTTAGATTTTCCCTCCAAATCCCCCCGCCCGCCAAACCCTAATTTCGTCTATTCAGCTTCGCCCCGGAGGACCCATCCCCTTCTCAAACCAACGTG GCTTTGTGGAAGCAAGAGAAGAGACCAAGATAATGATGCTTTCGAAGCTGAAGAAGAGGATGTGGTTTGCAAGTTTGGTTCTGATGAAGAAAGTCCCATC CGGATTCCTTCCACTCTGGTGATGTCAGAACAACCTAAACCTGTTTCAGATGTAGACTATCTACAGGAGCTGTTAGCCATTCAACAACAAGGGCCTAGAT CTATTGGCTTCTTTGGAACGCGGAATATGGGCTTCTTGCATCAGGAACTCATTGAGATTCTTAGTTATGCTTTAGTGATAACGAAGAATCATATATACAC CTCAGGTGCATCTGGCACTAATGCTGCTGTTATCAGAGGAGCATTAAGAGCAGAGAAGCCAGAGTTGCTTACAGTGATCTTGCCACAGAGTTTGAAAAAG CAACCTCCCGAAAGTCAGGAATTGCTTGAAAAAGTGAAGAACGTGATTGAAAAGCCTTACAATGATCACCTGTCGTTGATCGAGGCCAGCAGGCTGTGCA ACATGGACATAATATCACAAGTACAGCAAGTGATTTGCTTTGCATTTCATGACAGTAGACTGCTAATGGAAACATGTGAAGAGGCCAAAAGTCTCAGGAA AATTGTGACGCTGTTCTATCTGGACTGA
AA sequence Show only first row Show all	>Lus10026850 pacid=23142863 polypeptide=Lus10026850 locus=Lus10026850.g ID=Lus10026850.BGIv1.0 annot-version=v1.0 MSAVTGLATMKLLLTTSASPNSSSLFSASSSSSASLDFPSKSPRPPNPNFVYSASPRRTHPLLKPTWLCGSKRRDQDNDAFEAEEEDVVCKFGSDEESPI RIPSTLVMSEQPKPVSDVDYLQELLAIQQQGPRSIGFFGTRNMGFLHQELIEILSYALVITKNHIYTSGASGTNAAVIRGALRAEKPELLTVILPQSLKK QPPESQELLEKVKNVIEKPYNDHLSLIEASRLCNMDIISQVQQVICFAFHDSRLLMETCEEAKSLRKIVTLFYLD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G43945			unknown protein		Lus10026850 [exp]	0	1
AT5G58560		FOLK	farnesol kinase, Phosphatidate...		Lus10031288 [exp]	2.6	0.7638
AT5G47840		AMK2	adenosine monophosphate kinase...		Lus10003504 [exp]	4.9	0.7471
AT2G21350			RNA-binding CRS1 / YhbY (CRM) ...		Lus10017965 [exp]	15.1	0.7979
AT5G23530		ATCXE18	carboxyesterase 18 (.1)		Lus10039162 [exp]	20.4	0.7551
					Lus10034430 [exp]	23.1	0.7487
AT3G01650		RGLG1	RING domain ligase1 (.1)		Lus10033043 [exp]	26.8	0.7693
AT3G24140	bHLH	bHLH097, FMA	FAMA, basic helix-loop-helix (...		Lus10016680 [exp]	34.2	0.7535
AT2G40475		ASG8	ALTERED SEED GERMINATION 8, un...		Lus10012896 [exp]	36.5	0.7503
AT2G43945			unknown protein		Lus10020220 [exp]	45.3	0.7537
AT2G41680		NTRC	NADPH-dependent thioredoxin re...		Lus10018051 [exp]	76.0	0.7397

Compare expression of checked genes

Lus10026850 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.