Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G03310 554 / 0 ATLCAT3 ARABIDOPSIS LECITHIN:CHOLESTEROL ACYLTRANSFERASE 3, lecithin:cholesterol acyltransferase 3 (.1) AT4G19860 423 / 2e-144 alpha/beta-Hydrolases superfamily protein (.1) AT1G27480 60 / 2e-09 alpha/beta-Hydrolases superfamily protein (.1) AT3G03370 47 / 7e-06 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020225 [exp] 606 / 0 AT3G03340 516 / 1e-179 unfertilized embryo sac 6, LUC7 related protein (.1) Lus10017142 [exp] 412 / 5e-140 AT4G19860 748 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10018310 [exp] 410 / 2e-139 AT4G19860 749 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10007728 [exp] 50 / 3e-06 AT1G27480 484 / 3e-170 alpha/beta-Hydrolases superfamily protein (.1) Lus10018664 [exp] 49 / 8e-06 AT1G27480 491 / 5e-173 alpha/beta-Hydrolases superfamily protein (.1) Lus10019519 [exp] 46 / 6e-05 AT3G44830 923 / 0.0 Lecithin:cholesterol acyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G076300 [exp] 613 / 0 AT3G03310 632 / 0.0 ARABIDOPSIS LECITHIN:CHOLESTEROL ACYLTRANSFERASE 3, lecithin:cholesterol acyltransferase 3 (.1) Potri.015G121000 [exp] 426 / 2e-145 AT4G19860 781 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.012G121596 [exp] 414 / 8e-141 AT4G19860 756 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.014G014400 [exp] 50 / 2e-06 AT1G27480 535 / 0.0 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF02450 [flax] [poplar] LCAT Lecithin:cholesterol acyltransferase
Representative CDS sequence Show only first row Show all	>Lus10026853 pacid=23142801 polypeptide=Lus10026853 locus=Lus10026853.g ID=Lus10026853.BGIv1.0 annot-version=v1.0 ATGCTGAAGTTGTGCCCCTGTTTCTACGGCCGATGCTCCGGCGGCCCCGCCGTTTCCAGCTCCTCCTCCGATCTCGACCCGGTGCTTCTAGTCTCCGGGA TGGGCGGCTCCATCCTCAACTCCAAGCCCAAGAAAACGGGACTTCAGACTCGCGTTTGGGTTCGCTTCCTCTTGGCTGAGCTCGAGTTCAAGAACAAAGT CTGGTCCACTTACAATCCAGACACGGGTTACACGGAGGTGTTGAATAAAGATACGGAAATTGTTGTCCCTCAGGATGATTATGGCCTCTACGCCATTGAT ATTTTGGACCCATCTCCGGTTGTTAAATGTGTTCACTTGACAGAGGTATATCATTTCCATGATATGATTGAAATGCTGGTTGGCTGTGGATATAAGAAGG GCACCACATTGTTTGGGTACGGTTATGATTTCCGACAAAGTAACAGAATTGGCAACTCAATGGAGGGTCTTAAAGCCAAGTTGGAGACTGCTTATAAGGC TTCTGGCAATAGGAAAGTGAACATAATTACGCATTCAATGGGTGGACTGCTGGTGTCATGTTTCATGTCACTATACAAAGATGTCTTCTCAAAGTTCGTC AATAAGTGGATCTGCATTGCATGCCCTTTCCAAGGTGCTCCTGGGTGCATTAATGATTCTTTATTAACCGGCTTACAGTTTGTTGAAGGCTTTGAGAACT ATTTTTTTGTATCAAGGTGGACTATGCACCAACTGTTGGTGGAGTGTCCATCAATTTATGAGATGTTGCCTAACCCTGCATTTAAGTGGGCAAAAGAACC TCAAATTCAAGTATGGCGGAAGAAATCAGACGATGGAACTTCTGTCCAGTTAGAGTCCTATGGGCCGCTAAGCTATGGTGGAAATACAATTCCTCTACCA TTCAACATGGCTATCCTTAAATGGGCTACTGAAACCCGGCAGATGCTCAGTGATGCTGAGTTACCGGACGGGGTTTCCTTCTACAACATTTACGGGATAT CGCTCGATACACCTTTTGATGTATGCTATGGTTCAGAGAGCTCCCCGGTAGATGACTTATCTGAAGTGTGCCACACAATGATATATTTTAGATGTTTGAT TAATTTGATGAACACCGGACATGTTGATTTCCGACAGCCCGAGTACAGTTTCGTGGATGGTGATGGAACTGTTCCTGTCGAATCAGCCAAGGCAGATGGA TATGCAGCAACAGAGAGGATCGGAATTGCAGGTGAACACCGTGGAATACTAAGGGACGACAAGGTATTCAAACTCATCAAGAAATGGTTAGGAGTTGAAG AGAGTGAAAGCAAGCTACCAAGAAGAGCTAAAGTTAGGGATTATGCTTCTCAGGATTCGCATGTTTTCGTTTGA
AA sequence Show only first row Show all	>Lus10026853 pacid=23142801 polypeptide=Lus10026853 locus=Lus10026853.g ID=Lus10026853.BGIv1.0 annot-version=v1.0 MLKLCPCFYGRCSGGPAVSSSSSDLDPVLLVSGMGGSILNSKPKKTGLQTRVWVRFLLAELEFKNKVWSTYNPDTGYTEVLNKDTEIVVPQDDYGLYAID ILDPSPVVKCVHLTEVYHFHDMIEMLVGCGYKKGTTLFGYGYDFRQSNRIGNSMEGLKAKLETAYKASGNRKVNIITHSMGGLLVSCFMSLYKDVFSKFV NKWICIACPFQGAPGCINDSLLTGLQFVEGFENYFFVSRWTMHQLLVECPSIYEMLPNPAFKWAKEPQIQVWRKKSDDGTSVQLESYGPLSYGGNTIPLP FNMAILKWATETRQMLSDAELPDGVSFYNIYGISLDTPFDVCYGSESSPVDDLSEVCHTMIYFRCLINLMNTGHVDFRQPEYSFVDGDGTVPVESAKADG YAATERIGIAGEHRGILRDDKVFKLIKKWLGVEESESKLPRRAKVRDYASQDSHVFV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G03310		ATLCAT3	ARABIDOPSIS LECITHIN:CHOLESTER...		Lus10026853 [exp]	0	1
AT1G55310		ATSCL33, SR33, ...	SC35-like splicing factor 33 (...		Lus10016215 [exp]	2.0	0.9156
AT1G16810			unknown protein		Lus10026960 [exp]	5.1	0.8750
AT1G04130		TPR2, AtTPR2	tetratricopeptide repeat 2, Te...		Lus10025945 [exp]	5.8	0.8063
AT4G25200		ATHSP23.6-MITO	mitochondrion-localized small ...		Lus10031154 [exp]	10.1	0.8723
AT5G35320			unknown protein		Lus10026981 [exp]	11.0	0.8621
AT2G35900			unknown protein		Lus10021249 [exp]	11.3	0.8360
AT2G20560			DNAJ heat shock family protein...		Lus10017687 [exp]	12.3	0.8582
AT1G02840		ATSRP34, SR1, S...	Serine/Arginine-Rich Protein S...		Lus10029885 [exp]	14.3	0.8330
AT1G62740		Hop2	Hop2, stress-inducible protein...		Lus10028919 [exp]	14.4	0.8716
AT1G74310		HOT1, ATHSP101	heat shock protein 101 (.1)		Lus10021159 [exp]	19.5	0.8635

Compare expression of checked genes

Lus10026853 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.