Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G59470 118 / 1e-31 FAR1_related Far-red impaired responsive (FAR1) family protein (.1), Far-red impaired responsive (FAR1) family protein (.2) AT3G07500 102 / 1e-25 FAR1_related Far-red impaired responsive (FAR1) family protein (.1) AT4G12850 94 / 3e-23 FAR1_related Far-red impaired responsive (FAR1) family protein (.1), Far-red impaired responsive (FAR1) family protein (.2), Far-red impaired responsive (FAR1) family protein (.3) AT2G43280 81 / 4e-18 FAR1_related Far-red impaired responsive (FAR1) family protein (.1) AT4G38180 80 / 2e-16 FAR1_related FRS5 FAR1-related sequence 5 (.1) AT5G18960 78 / 1e-15 FAR1_related FRS12 FAR1-related sequence 12 (.1) AT3G06250 74 / 2e-14 FAR1_related FRS7 FAR1-related sequence 7 (.1) AT3G22170 57 / 8e-09 FAR1_related FHY3 far-red elongated hypocotyls 3 (.1.2) AT2G32250 56 / 1e-08 FAR1_related FRS2 FAR1-related sequence 2 (.1.2.3.4) AT4G19990 55 / 3e-08 FAR1_related FRS1 FAR1-related sequence 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020226 [exp] 389 / 1e-137 AT3G59470 120 / 7e-33 Far-red impaired responsive (FAR1) family protein (.1), Far-red impaired responsive (FAR1) family protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G076800 [exp] 181 / 1e-55 AT3G59470 156 / 1e-46 Far-red impaired responsive (FAR1) family protein (.1), Far-red impaired responsive (FAR1) family protein (.2) Potri.007G129500 [exp] 129 / 8e-36 AT3G59470 260 / 9e-88 Far-red impaired responsive (FAR1) family protein (.1), Far-red impaired responsive (FAR1) family protein (.2) Potri.017G029100 [exp] 124 / 9e-34 AT3G59470 323 / 1e-112 Far-red impaired responsive (FAR1) family protein (.1), Far-red impaired responsive (FAR1) family protein (.2) Potri.014G176500 [exp] 117 / 1e-31 AT3G07500 275 / 2e-94 Far-red impaired responsive (FAR1) family protein (.1) Potri.002G239400 [exp] 101 / 1e-25 AT4G12850 207 / 1e-68 Far-red impaired responsive (FAR1) family protein (.1), Far-red impaired responsive (FAR1) family protein (.2), Far-red impaired responsive (FAR1) family protein (.3) Potri.007G128900 [exp] 100 / 5e-25 AT3G07500 154 / 2e-46 Far-red impaired responsive (FAR1) family protein (.1) Potri.014G176600 [exp] 97 / 5e-24 AT4G12850 178 / 5e-57 Far-red impaired responsive (FAR1) family protein (.1), Far-red impaired responsive (FAR1) family protein (.2), Far-red impaired responsive (FAR1) family protein (.3) Potri.002G239300 [exp] 94 / 1e-22 AT2G43280 130 / 2e-37 Far-red impaired responsive (FAR1) family protein (.1) Potri.017G029400 [exp] 92 / 8e-22 AT2G43280 319 / 4e-112 Far-red impaired responsive (FAR1) family protein (.1) Potri.007G128700 [exp] 90 / 5e-21 AT3G07500 138 / 2e-40 Far-red impaired responsive (FAR1) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0274 [flax] [poplar] WRKY-GCM1 PF03101 [flax] [poplar] FAR1 FAR1 DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10026854 pacid=23142892 polypeptide=Lus10026854 locus=Lus10026854.g ID=Lus10026854.BGIv1.0 annot-version=v1.0 ATGGACGGACCAGATCTTTCTTTGGAAAGCCAAACTGTAACTTTATGGGGGAGGAGAGCGAGAGATGAAGCCGACCATTTCGGTCGTCTGGGATTCAGAG TTCATCCATCTGTCCCAGCTATGTCTTCAATTAGATTTTTTACCAGTGGCGATGAGGTTTACTCGAAACCTACAATGGATTCGGATGGTGGTGGTGGCAG CGACGGGAATCCAGATCCGATTTCAGGTGACGAAGGGGCAGCTTCGGCGCCGGACTTGAACCGTAACGAATCATCTTCGAATCGCGAGAAAGAAACCGCA GTAGTTGACCCGGACGAGCCATACGTGGGCCGGGAATTCGACTCGGAAGCGGAATCCGTGGCGTTCTACACGGCGTATGCGCAGCGTAATGGTTTTGGAG TACGGGTGAGGGATCATTCCCGGGGCCGCGAGGGATTTGTGGTGGCGAGAACAATAGTATGCAACAAAGAGGGATTCAAGAAGGAGAAGGAGAAGGTGAA TAATATTACATATCTGAAGAAGAAGAATGAGAAGTTGAAGACGGCTGCTCTTGCTCTGCCTGCTGCTGCGCCGTTTAGGATGGGATGCAATGCAAAAGTG GCATTCAAGAGGCTGGAAACTGGCAAGTGGACTGTGAAAAGATTTATCAAAGAGCACAATCATCCACTCTATGTGCAGGAACTGTTTTCATGCCCCAGGG TCTTACAAATACCGGCTGACGATAGAATAGTACACCAACTCAACGAAGAGCTGGCGAAGGAGAGAATGCGATCTGCTTCATTGAGAGAATTGGTACAAGT GCTTCTGAATCACATTGAGGAGCATACACAAGGGTTATCCCAGAAGGTGGAGTGCATGGTGGAAAAAGTAAACAAGATTGATGATTCTCGAGAGAAAGAG CACATAGCTGAGTAA
AA sequence Show only first row Show all	>Lus10026854 pacid=23142892 polypeptide=Lus10026854 locus=Lus10026854.g ID=Lus10026854.BGIv1.0 annot-version=v1.0 MDGPDLSLESQTVTLWGRRARDEADHFGRLGFRVHPSVPAMSSIRFFTSGDEVYSKPTMDSDGGGGSDGNPDPISGDEGAASAPDLNRNESSSNREKETA VVDPDEPYVGREFDSEAESVAFYTAYAQRNGFGVRVRDHSRGREGFVVARTIVCNKEGFKKEKEKVNNITYLKKKNEKLKTAALALPAAAPFRMGCNAKV AFKRLETGKWTVKRFIKEHNHPLYVQELFSCPRVLQIPADDRIVHQLNEELAKERMRSASLRELVQVLLNHIEEHTQGLSQKVECMVEKVNKIDDSREKE HIAE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G59470	FAR1_related		Far-red impaired responsive (F...		Lus10026854 [exp]	0	1
AT4G08580			microfibrillar-associated prot...		Lus10020321 [exp]	1.4	0.8601
AT5G57860			Ubiquitin-like superfamily pro...		Lus10036598 [exp]	1.7	0.8526
AT3G03490		AtPEX19-1, PEX1...	peroxin 19-1 (.1)		Lus10010463 [exp]	4.6	0.8208
AT2G36130			Cyclophilin-like peptidyl-prol...		Lus10021335 [exp]	4.9	0.8195
					Lus10025864 [exp]	7.2	0.7585
AT1G76200			unknown protein		Lus10016001 [exp]	7.2	0.8433
AT2G36130			Cyclophilin-like peptidyl-prol...		Lus10017010 [exp]	7.6	0.8599
AT4G20150			unknown protein		Lus10038391 [exp]	10.1	0.8257
AT3G29130			unknown protein		Lus10038450 [exp]	10.1	0.7702
AT4G22380			Ribosomal protein L7Ae/L30e/S1...		Lus10015295 [exp]	10.6	0.8017

Compare expression of checked genes

Lus10026854 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.