Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17410 763 / 0 Spc97 / Spc98 family of spindle pole body (SBP) component (.1), Spc97 / Spc98 family of spindle pole body (SBP) component (.2) AT5G06680 79 / 5e-15 ATSPC98, SPC98, ATGCP3 ARABIDOPSIS THALIANA GAMMA TUBULIN COMPLEX PROTEIN 3, spindle pole body component 98 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020227 [exp] 494 / 7e-172 AT5G17410 280 / 3e-89 Spc97 / Spc98 family of spindle pole body (SBP) component (.1), Spc97 / Spc98 family of spindle pole body (SBP) component (.2) Lus10020228 [exp] 461 / 1e-159 AT5G17410 382 / 3e-129 Spc97 / Spc98 family of spindle pole body (SBP) component (.1), Spc97 / Spc98 family of spindle pole body (SBP) component (.2) Lus10029296 [exp] 87 / 2e-17 AT5G06680 998 / 0.0 ARABIDOPSIS THALIANA GAMMA TUBULIN COMPLEX PROTEIN 3, spindle pole body component 98 (.1) Lus10016246 [exp] 81 / 2e-15 AT5G06680 1262 / 0.0 ARABIDOPSIS THALIANA GAMMA TUBULIN COMPLEX PROTEIN 3, spindle pole body component 98 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G180700 [exp] 851 / 0 AT5G17410 994 / 0.0 Spc97 / Spc98 family of spindle pole body (SBP) component (.1), Spc97 / Spc98 family of spindle pole body (SBP) component (.2) Potri.016G059900 [exp] 82 / 8e-16 AT5G06680 1301 / 0.0 ARABIDOPSIS THALIANA GAMMA TUBULIN COMPLEX PROTEIN 3, spindle pole body component 98 (.1) Potri.006G194200 [exp] 76 / 7e-14 AT5G06680 1201 / 0.0 ARABIDOPSIS THALIANA GAMMA TUBULIN COMPLEX PROTEIN 3, spindle pole body component 98 (.1) Potri.009G153300 [exp] 44 / 0.0006 AT3G43610 855 / 0.0 Spc97 / Spc98 family of spindle pole body (SBP) component (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0540 [flax] [poplar] GCP PF04130 [flax] [poplar] GCP_C_terminal Gamma tubulin complex component C-terminal
Representative CDS sequence Show only first row Show all	>Lus10026855 pacid=23142808 polypeptide=Lus10026855 locus=Lus10026855.g ID=Lus10026855.BGIv1.0 annot-version=v1.0 ATGGCCGCATCCATTTCCTGTCCTTCCACTCCTCACTGGAACGTCGAGAGACCCTTCCTCACTGGCCGCTTCCACCAGGAAACGAAGCCATCTTCGACCA AGGGATTTGCTTTTGATTCCTTCAGCTCCGGATTGGACTCGACTATTTGTTCTTATAATGCTGCACTTCAGGAGCTCCTTGTCATTGATGATCTTATGTC TGCATTGGTCGGACTAGAAGGACGGTATATCTTTATCAAAAGAGTTCGTGGAAAGGAAGATGAAATTGTTTTCCAGGTTGATCCATCGATGGATTTGGCA CTACAGGAATTTGCACAGAGGTTGTTTCCTTTGTGTAAGAACTACCTGCTGATTGACCAGTTCGTGGAATCAAGGTCACAGTTCAAGAATGGCTTGGTTA ATCATGCATTTGCTGCTGCACTCAGGAATCTTCTTCTATCCTGCTCTGCACCTGTTCTTGAGCCTTATCTTTTGAGCATTGCTACATATGGAACTTCAGC TGAGAATTTCTTCCCTTCCAAAATCCAGGTTGGTTCCTTTAACTGTATGCCATTGCTGAATTTTCTTCATCAGGACTACCAGGCCATGGTAGCACAGCTG GAGCATCAGTTTCGACTAGGAAGACTTTCCATTCAAGGGCTTTGGTTTTACTCTCAGCCTTTGATGGCTCCCATGCAAGCATTGTCCATCGTGGTTCAGA AGGTTTCCGCAAATAACTTCGCAAAAGCCATGGCTGGTGATAATGCAGTGAGGTCATTGTTAGAGAAGATGACAGAATGTGCAAGTAATGCATATCTTGG AATATTAGAGAGGTGGGTGTACGAAGGAGTGATAGAAGATCCTTATGGTGAATTTTTTATTGCTGAGAACAAATCTCTTCATAAGGAGAGCCTCACTCAG GACTATGATGCTAAGTATTGGTGGAAACGTTACAGCCTTAAGGAAGGGATTCCCAGCTTCCTTGCAAATATTTCTGGGATAATTTTGACAACTGGAAAGT ACTTAAATGTTATGAGAGAATGTGGACACAATGTTCAGGTTCCTGCCTCAGAAAATTCTAAGCTAACCAACTTTGGCTCAGACCATCACTATCTTGAGTG CGTAAAAGCTGCATATCAGTTCGCAGGCAATGAGCTCTTGAATCTCATTACAGAAAGGTATGATTTGACGGGGAAGCTGCGGTCAATTAAGCATTACCTT CTTCTTGATCAGGGTGATTTTTTGGTTCATTTTATGGACATAGCTCGAGAAGAACTAGCAAAAAAGCTTGATGAAATTTCGGTTGAGAAGCTTCAGTCGC TTCTAGACCTTGCTTTGCGTACTACAGCTGCAGCAGCGGATCCTTGCCATGAGGACTTGACGTGTTGTGTTGAAAAGGCTACTTTACGTAAAAGACTGGG TAGCTTGAATGATGCTGCTGTTTCGGTTGCTGATGATGATCCTGAAGAGCCAACAACTGTTACTGGTCTTGAGACATTCTCCTTAAGTTACAAGACCGAC AGCTTTCTGGGGCCTGGCAACTGCATCAAGTATGTTCCAGAATTTGAGTTTATCTACTATGCTCACTTTCCTGCCTCAATGTGGCAATATTATCTGGCTC TGCTGAATGCTTTTTTCAGGGAGTTCGTGCCCTCAAGATACAGGGAACTGCAATATCCAGATCATCCCTTCTCTGCCGCAGTACTTGAACCAAACTGGCA TGTGATGTATAATAGACTTCAGACTGCAAGGAGCATAGACGAAGTTATCCAACATCATGAGTTTTTCCTTGACAAGTGTCTAAAAGAGTGTTTGCTCCTG TCACCTCTTCTGCTTAAGAAGGTGGACACACTAAAATCATTGTGCCTACAGTATGCTGCTGCAACTCAGTGGTTGATATCATCATCTATCGACATCGATG AGTCGAATGCAACGCAGCGATCAGAAAGGAGGAAGCAAGGAAAGTCTAGCAGCAGGCAGTCCGTGCAGCTACGAACCCTGAAACAGAACCCGGCTGTTAC AGATTCTATACTGAAATTCGAGAGGGAGTTCAATTCGGAACTTCAGAGTTTGGGTCCTATCTTGAGTAGCAATTCACAAGCGGAACCATATTTAACTCAT CTTGCACAGTGGATCCTCGGAGTCGGAAGCGATAAATGA
AA sequence Show only first row Show all	>Lus10026855 pacid=23142808 polypeptide=Lus10026855 locus=Lus10026855.g ID=Lus10026855.BGIv1.0 annot-version=v1.0 MAASISCPSTPHWNVERPFLTGRFHQETKPSSTKGFAFDSFSSGLDSTICSYNAALQELLVIDDLMSALVGLEGRYIFIKRVRGKEDEIVFQVDPSMDLA LQEFAQRLFPLCKNYLLIDQFVESRSQFKNGLVNHAFAAALRNLLLSCSAPVLEPYLLSIATYGTSAENFFPSKIQVGSFNCMPLLNFLHQDYQAMVAQL EHQFRLGRLSIQGLWFYSQPLMAPMQALSIVVQKVSANNFAKAMAGDNAVRSLLEKMTECASNAYLGILERWVYEGVIEDPYGEFFIAENKSLHKESLTQ DYDAKYWWKRYSLKEGIPSFLANISGIILTTGKYLNVMRECGHNVQVPASENSKLTNFGSDHHYLECVKAAYQFAGNELLNLITERYDLTGKLRSIKHYL LLDQGDFLVHFMDIAREELAKKLDEISVEKLQSLLDLALRTTAAAADPCHEDLTCCVEKATLRKRLGSLNDAAVSVADDDPEEPTTVTGLETFSLSYKTD SFLGPGNCIKYVPEFEFIYYAHFPASMWQYYLALLNAFFREFVPSRYRELQYPDHPFSAAVLEPNWHVMYNRLQTARSIDEVIQHHEFFLDKCLKECLLL SPLLLKKVDTLKSLCLQYAAATQWLISSSIDIDESNATQRSERRKQGKSSSRQSVQLRTLKQNPAVTDSILKFEREFNSELQSLGPILSSNSQAEPYLTH LAQWILGVGSDK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G17410			Spc97 / Spc98 family of spindl...		Lus10026855 [exp]	0	1
AT3G55060			unknown protein		Lus10030304 [exp]	2.0	0.9032
AT5G05970		NEDD1	NEURAL PRECURSOR CELL EXPRESSE...		Lus10030162 [exp]	3.2	0.9136
AT5G61990			Pentatricopeptide repeat (PPR)...		Lus10036020 [exp]	7.4	0.9143
AT1G73450			Protein kinase superfamily pro...		Lus10042297 [exp]	7.4	0.9005
AT3G07140			GPI transamidase component Gpi...		Lus10025918 [exp]	7.5	0.8955
AT1G08130		ATLIG1	DNA ligase 1 (.1)		Lus10016149 [exp]	7.7	0.9044
AT5G55230		ATMAP65-1	microtubule-associated protein...		Lus10043178 [exp]	15.5	0.8896
AT5G43310			COP1-interacting protein-relat...		Lus10021172 [exp]	15.5	0.8948
AT5G38690			Zinc-finger domain of monoamin...		Lus10033539 [exp]	15.6	0.8792
AT3G05040		HST1, HST	HASTY 1, HASTY, ARM repeat sup...		Lus10001714 [exp]	18.0	0.8871

Compare expression of checked genes

Lus10026855 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.