Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G65430 846 / 0 ATARI8, ARI8 ARABIDOPSIS ARIADNE 8, ARIADNE 8, IBR domain-containing protein (.1) AT2G31510 816 / 0 ATARI7, ARI7 ARABIDOPSIS ARIADNE 7, ARIADNE 7, IBR domain-containing protein (.1) AT1G05890 777 / 0 ATARI5, ARI5 ARABIDOPSIS ARIADNE 5, ARIADNE 5, RING/U-box superfamily protein (.1.2) AT2G31770 596 / 0 ATARI9, ARI9 ARABIDOPSIS ARIADNE 9, ARIADNE 9, RING/U-box superfamily protein (.1) AT2G31760 573 / 0 ATARI10, ARI10 ARABIDOPSIS ARIADNE 10, ARIADNE 10, RING/U-box superfamily protein (.1) AT2G31780 494 / 1e-171 ATARI11 ARABIDOPSIS ARIADNE 11, ARIADNE 11, RING/U-box superfamily protein (.1) AT1G05880 343 / 5e-112 ATARI12, ARI12 ARABIDOPSIS ARIADNE 12, ARIADNE 12, RING/U-box superfamily protein (.1.2) AT4G34370 238 / 1e-70 ATARI1 ARABIDOPSIS ARIADNE 1, ARIADNE 1, RING/U-box superfamily protein (.1.2) AT3G27710 216 / 1e-62 ARARI3, ATARI13 ARABIDOPSIS ARIADNE 3, RING/U-box superfamily protein (.1) AT2G16090 209 / 9e-60 ATARI2, ARI2, ATARI12 ARABIDOPSIS ARIADNE 2, ARIADNE 2, RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025566 [exp] 799 / 0 AT2G31510 826 / 0.0 ARABIDOPSIS ARIADNE 7, ARIADNE 7, IBR domain-containing protein (.1) Lus10027027 [exp] 799 / 0 AT2G31510 807 / 0.0 ARABIDOPSIS ARIADNE 7, ARIADNE 7, IBR domain-containing protein (.1) Lus10020229 [exp] 728 / 0 AT1G65430 833 / 0.0 ARABIDOPSIS ARIADNE 8, ARIADNE 8, IBR domain-containing protein (.1) Lus10013371 [exp] 439 / 5e-149 AT2G31510 441 / 2e-150 ARABIDOPSIS ARIADNE 7, ARIADNE 7, IBR domain-containing protein (.1) Lus10040508 [exp] 215 / 5e-62 AT4G34370 746 / 0.0 ARABIDOPSIS ARIADNE 1, ARIADNE 1, RING/U-box superfamily protein (.1.2) Lus10042348 [exp] 208 / 3e-59 AT4G34370 827 / 0.0 ARABIDOPSIS ARIADNE 1, ARIADNE 1, RING/U-box superfamily protein (.1.2) Lus10011309 [exp] 206 / 2e-58 AT4G34370 731 / 0.0 ARABIDOPSIS ARIADNE 1, ARIADNE 1, RING/U-box superfamily protein (.1.2) Lus10000131 [exp] 182 / 1e-53 AT2G31760 182 / 7e-55 ARABIDOPSIS ARIADNE 10, ARIADNE 10, RING/U-box superfamily protein (.1) Lus10026319 [exp] 192 / 2e-53 AT2G16090 788 / 0.0 ARABIDOPSIS ARIADNE 2, ARIADNE 2, RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G180600 [exp] 985 / 0 AT1G65430 860 / 0.0 ARABIDOPSIS ARIADNE 8, ARIADNE 8, IBR domain-containing protein (.1) Potri.008G077100 [exp] 971 / 0 AT1G65430 836 / 0.0 ARABIDOPSIS ARIADNE 8, ARIADNE 8, IBR domain-containing protein (.1) Potri.007G126900 [exp] 847 / 0 AT2G31510 836 / 0.0 ARABIDOPSIS ARIADNE 7, ARIADNE 7, IBR domain-containing protein (.1) Potri.017G032000 [exp] 839 / 0 AT2G31510 834 / 0.0 ARABIDOPSIS ARIADNE 7, ARIADNE 7, IBR domain-containing protein (.1) Potri.002G131200 [exp] 577 / 0 AT1G65430 571 / 0.0 ARABIDOPSIS ARIADNE 8, ARIADNE 8, IBR domain-containing protein (.1) Potri.002G131300 [exp] 550 / 0 AT1G65430 536 / 0.0 ARABIDOPSIS ARIADNE 8, ARIADNE 8, IBR domain-containing protein (.1) Potri.T124304 [exp] 202 / 3e-57 AT4G34370 835 / 0.0 ARABIDOPSIS ARIADNE 1, ARIADNE 1, RING/U-box superfamily protein (.1.2) Potri.009G111200 [exp] 202 / 3e-57 AT4G34370 835 / 0.0 ARABIDOPSIS ARIADNE 1, ARIADNE 1, RING/U-box superfamily protein (.1.2) Potri.001G037200 [exp] 71 / 4e-13 AT3G14250 240 / 3e-78 RING/U-box superfamily protein (.1) Potri.001G214201 [exp] 66 / 5e-13 AT1G65430 66 / 9e-14 ARABIDOPSIS ARIADNE 8, ARIADNE 8, IBR domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF01485 [flax] [poplar] IBR IBR domain, a half RING-finger domain
Representative CDS sequence Show only first row Show all	>Lus10026856 pacid=23142941 polypeptide=Lus10026856 locus=Lus10026856.g ID=Lus10026856.BGIv1.0 annot-version=v1.0 ATGGAATCGGAAGATGAATTTGATATGCAAGACGCTGCCGAATCGGCCGAAGACGATTTTTACAGCGGCGGAGATGATGGGTTCGATTCCGACGACGCCG ACGTTGCTGATTACGAGTTTATCAGCAATGATTCCGATGATTCCGATGACCTCATTTCCCATCGCCACCAGCAAAACTATACGATTTTGAGCGAAGCTGA TATTCGCCGCCGTCAGGACGATGATGTGGCCAGAATAGCTACGGTGCTCTCCATTTCTAAGGTTGCTGCCAGTATCCTCCTACGATATTATAACTGGAGT GTTAGTAAAGTGAATGATGCATGGTTTGCTGACGAAGAGAAAGTTCGTAAGGCTGTAGGCTTACTGGAAGAAGCTGCTGTTACATTTCCTGATGGAAGAG AAATGACTTGTGGGATTTGTTTTGAAACCTATCCATGTGACAAGCTGCATGCAGCTGCTTGTGGTCATCCCTTTTGTAGCTCTTGCTGGGCAGGTTATAC TGGTACTGCCATTAACGATGGCCCTGGGTGTTTGATGTTGCGATGTCCTGATCCATCTTGTGCCGCTGCTGTTGGTCAAGATATGATAAATGCATTGGCT GCTAAGGAAGATAAGGAGAAATATAATCGTTACTTCATTAGATCTTACATTGAGGACAACAGGAAGACCAAATGGTGTCCTGCTCCAGGATGTGATTATG CTGTCGATTTTATTGTTGGCAGTGCTAGCTATGATGTTTCTTGCGGCTGTTCATATAGCTTTTGCTGGAATTGTACTGAGGAAGCTCACAGACCTGTTGA CTGTGGAACTGTAGCCAAGTGGATACTGAAAAACAGTGCTGAATCTGAAAACATGAACTGGATATTAGCTAATTCTAAGCCTTGCCCAAAGTGCAAACGT CCAATCGAGAAGAACCAAGGCTGTATGCATATTACCTGCACTCCTCCTTGTAAATTTGAATTTTGCTGGCTTTGCCTTGGTGCTTGGTCAGAACACGGGG AGAGGACTGGTGGTTTCTATGCGTGTAACCGTTATGAAACAGCAAAACAAGAGGGAGCGTATGATGATGCTGAGAAGCGAAGAGAGATGGCTAAAAACTC TCTGGAGAGGTATACCCACTATTACGAACGATGGGCAACTAATCAATCATCTCGGCAAAAAGCTATGGCAGACCTGCAGCAGATGCAAACTGTGCATCTG GAGAAGCTGAGTGACAATCAGTGCCAACCTGAATCCCAGTTGAAGTTTATAACTGAGGCATGGTTGCAGATAGTTGAATGTCGCCGAGTTTTGAAGTGGA CATATGCATACGGTTATTATTTACCTGAACATGAGCATGCTAAGAGGCAGTTTTTTGAGTACCTGCAAGGCGAGGCAGAGTCTGGTTTAGAGAGACTGCA TCAATGTGCAGAGAAGGAGCTTCAAGTGTACCTGAATTCCGAGGGCCCTTCAAAAGACTTCAATGAGTTCCGCACCAAACTTGCCGGATTGACTAGTGTG ACTAGGAACTACTTTGAGAATCTAGTGCGTGCTTTAGAGAATGGTCTATCAGATGTGGACGCTCATGGGACCACCAGTAGAACAGGAAGCTCAAAAGGCA TAGGTGGGAGTAGTAAGGGAAGAGGAGGCAAAGGCAAGGGGTCCACATCCAGATCGTCAAGTGGGCCAAGTAGAGGTATCGACGATTCAACTCACTGGTC CTGTGAACATTGCACCTATGCTAACATAAAATCAGCCACCATATGTGCAATGTGCCAGCAACGTCGTTAG
AA sequence Show only first row Show all	>Lus10026856 pacid=23142941 polypeptide=Lus10026856 locus=Lus10026856.g ID=Lus10026856.BGIv1.0 annot-version=v1.0 MESEDEFDMQDAAESAEDDFYSGGDDGFDSDDADVADYEFISNDSDDSDDLISHRHQQNYTILSEADIRRRQDDDVARIATVLSISKVAASILLRYYNWS VSKVNDAWFADEEKVRKAVGLLEEAAVTFPDGREMTCGICFETYPCDKLHAAACGHPFCSSCWAGYTGTAINDGPGCLMLRCPDPSCAAAVGQDMINALA AKEDKEKYNRYFIRSYIEDNRKTKWCPAPGCDYAVDFIVGSASYDVSCGCSYSFCWNCTEEAHRPVDCGTVAKWILKNSAESENMNWILANSKPCPKCKR PIEKNQGCMHITCTPPCKFEFCWLCLGAWSEHGERTGGFYACNRYETAKQEGAYDDAEKRREMAKNSLERYTHYYERWATNQSSRQKAMADLQQMQTVHL EKLSDNQCQPESQLKFITEAWLQIVECRRVLKWTYAYGYYLPEHEHAKRQFFEYLQGEAESGLERLHQCAEKELQVYLNSEGPSKDFNEFRTKLAGLTSV TRNYFENLVRALENGLSDVDAHGTTSRTGSSKGIGGSSKGRGGKGKGSTSRSSSGPSRGIDDSTHWSCEHCTYANIKSATICAMCQQRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G65430		ATARI8, ARI8	ARABIDOPSIS ARIADNE 8, ARIADNE...		Lus10026856 [exp]	0	1
AT5G24740			Protein of unknown function (D...		Lus10003834 [exp]	7.0	0.7569
AT3G47550			RING/FYVE/PHD zinc finger supe...		Lus10034454 [exp]	9.8	0.7921
AT3G06880			Transducin/WD40 repeat-like su...		Lus10034937 [exp]	14.5	0.7573
AT5G50400		ATPAP27, PAP27	ARABIDOPSIS THALIANA PURPLE AC...		Lus10012144 [exp]	17.6	0.7405
AT5G55560			Protein kinase superfamily pro...		Lus10001739 [exp]	20.2	0.7818
AT3G51620			PAP/OAS1 substrate-binding dom...		Lus10006094 [exp]	49.4	0.7142
AT5G61910			DCD (Development and Cell Deat...		Lus10032533 [exp]	55.2	0.7351
AT4G24160			alpha/beta-Hydrolases superfam...		Lus10033927 [exp]	60.1	0.7316
AT2G46060			transmembrane protein-related ...		Lus10018827 [exp]	81.4	0.7066
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Lus10001776 [exp]	83.0	0.6990

Compare expression of checked genes

Lus10026856 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.