Plant FIBer expression Database

Lus10026857 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G16250 225 / 1e-75 unknown protein
AT3G02640 210 / 1e-69 unknown protein
AT5G36710 181 / 4e-58 unknown protein
AT5G36800 181 / 4e-58 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G078000
[exp]
256 / 9e-88 AT5G16250 261 / 4e-90 unknown protein
Potri.010G179300
[exp]
255 / 2e-87 AT5G16250 266 / 5e-92 unknown protein
Potri.019G113300
[exp]
216 / 6e-72 AT5G16250 226 / 4e-76 unknown protein
Potri.013G127900
[exp]
196 / 2e-64 AT5G16250 207 / 5e-69 unknown protein
PFAM info
Representative CDS sequence
>Lus10026857 pacid=23142831 polypeptide=Lus10026857 locus=Lus10026857.g ID=Lus10026857.BGIv1.0 annot-version=v1.0
ATGGGAATGGGGAGCATAACCCTAGGCGACGCAGCAGCGACCAGCAACCGACACTACCATGTCCACAAGTTCTTCCTCTTCTGCAATTCCCTCCTCCTCG
GCGCTGCCTCCGCCTGCATCTTCCTCACAATCTCCCTCCGCATGATCCCTTCCCTCTGCGGCTTCTTCCTGGTCCTCCTCCACATCCTAACAATCGCCGG
CGCCGTCTGCGGATGCGCGGCCGCCTCTTCGGACACCTTCGGATGGTACTCTGCACACATGGTGGCGACGGTGCTGACGGCGATATTCCAGGGGTCGGTG
TCGGTGCTGATATTCACGAGGACAGGCGATTTCCTCGGGGAGCTGAAGTCGTACGTGAGGGAGGAGGACGGCGCAGTGATTTTGAAGCTCGCCGGAGGGC
TGTCGGCGCTGATTTTCTGCTTCGAGTGGGGGGTGCTAACCCTAGCCTTCTTCCTGAAATACTACTCCTATGTGGAGGGAGGAAACGGGCGAGTTGCTAC
TTCTACTCCGAATTCGGCGGCCTTCAAGAGGGGAACTGCCCGGGTTCACCAGGAAGATGAATTGAAGGACTGGCCGTGGCCTTTCCAAGTCTGA
AA sequence
>Lus10026857 pacid=23142831 polypeptide=Lus10026857 locus=Lus10026857.g ID=Lus10026857.BGIv1.0 annot-version=v1.0
MGMGSITLGDAAATSNRHYHVHKFFLFCNSLLLGAASACIFLTISLRMIPSLCGFFLVLLHILTIAGAVCGCAAASSDTFGWYSAHMVATVLTAIFQGSV
SVLIFTRTGDFLGELKSYVREEDGAVILKLAGGLSALIFCFEWGVLTLAFFLKYYSYVEGGNGRVATSTPNSAAFKRGTARVHQEDELKDWPWPFQV

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G16250 unknown protein Lus10026857
[exp]
0 1
AT5G25590 Protein of unknown function (D... Lus10037901
[exp]
1.0 0.9542
AT5G03870 Glutaredoxin family protein (.... Lus10021353
[exp]
3.7 0.9525
AT1G07820 Histone superfamily protein (.... Lus10015492
[exp]
3.9 0.9451
AT5G07670 RNI-like superfamily protein (... Lus10031742
[exp]
3.9 0.9496
AT1G31335 unknown protein Lus10036190
[exp]
6.3 0.9248
AT5G45700 Haloacid dehalogenase-like hyd... Lus10007321
[exp]
6.6 0.9459
AT4G03100 Rho GTPase activating protein ... Lus10024768
[exp]
7.0 0.9413
AT4G24265 unknown protein Lus10007441
[exp]
7.7 0.8926
AT4G15830 ARM repeat superfamily protein... Lus10043416
[exp]
11.2 0.9445
AT3G07800 Thymidine kinase (.1) Lus10012347
[exp]
11.4 0.9284

Lus10026857 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.