Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16260 521 / 2e-180 ELF9 EARLY FLOWERING 9, RNA binding (RRM/RBD/RNP motifs) family protein (.1) AT2G16940 56 / 8e-08 Splicing factor, CC1-like (.1.2.3) AT5G09880 50 / 3e-06 Splicing factor, CC1-like (.1) AT1G60900 49 / 8e-06 U2 snRNP auxilliary factor, large subunit, splicing factor (.1) AT3G19130 44 / 0.0004 ATRBP47B RNA-binding protein 47B (.1) AT1G10320 43 / 0.0009 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020230 [exp] 832 / 0 AT5G16260 508 / 8e-177 EARLY FLOWERING 9, RNA binding (RRM/RBD/RNP motifs) family protein (.1) Lus10005059 [exp] 56 / 1e-07 AT2G16940 534 / 0.0 Splicing factor, CC1-like (.1.2.3) Lus10027830 [exp] 56 / 1e-07 AT2G16940 553 / 0.0 Splicing factor, CC1-like (.1.2.3) Lus10034466 [exp] 52 / 1e-06 AT2G16940 569 / 0.0 Splicing factor, CC1-like (.1.2.3) Lus10025075 [exp] 52 / 2e-06 AT2G16940 565 / 0.0 Splicing factor, CC1-like (.1.2.3) Lus10012902 [exp] 47 / 3e-05 AT1G50300 388 / 4e-134 TBP-associated factor 15 (.1) Lus10030555 [exp] 46 / 0.0001 AT1G50300 393 / 8e-135 TBP-associated factor 15 (.1) Lus10038139 [exp] 44 / 0.0003 AT1G10320 570 / 0.0 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G179000 [exp] 589 / 0 AT5G16260 533 / 0.0 EARLY FLOWERING 9, RNA binding (RRM/RBD/RNP motifs) family protein (.1) Potri.008G078200 [exp] 574 / 0 AT5G16260 495 / 3e-171 EARLY FLOWERING 9, RNA binding (RRM/RBD/RNP motifs) family protein (.1) Potri.009G137200 [exp] 55 / 2e-07 AT2G16940 535 / 0.0 Splicing factor, CC1-like (.1.2.3) Potri.011G050400 [exp] 54 / 2e-07 AT1G60900 532 / 0.0 U2 snRNP auxilliary factor, large subunit, splicing factor (.1) Potri.004G177000 [exp] 53 / 6e-07 AT2G16940 538 / 0.0 Splicing factor, CC1-like (.1.2.3) Potri.004G040900 [exp] 52 / 9e-07 AT1G60900 541 / 0.0 U2 snRNP auxilliary factor, large subunit, splicing factor (.1) Potri.005G148100 [exp] 46 / 9e-05 AT5G09880 553 / 0.0 Splicing factor, CC1-like (.1) Potri.005G258000 [exp] 43 / 0.0003 AT1G27650 352 / 1e-122 U2 snRNP auxiliary factor small subunit, putative (.1.2) Potri.010G170700 [exp] 44 / 0.0004 AT1G50300 320 / 2e-107 TBP-associated factor 15 (.1) Potri.007G009800 [exp] 44 / 0.0005 AT5G09880 519 / 9e-180 Splicing factor, CC1-like (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0673 [flax] [poplar] GYF PF02213 [flax] [poplar] GYF GYF domain CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10026858 pacid=23142927 polypeptide=Lus10026858 locus=Lus10026858.g ID=Lus10026858.BGIv1.0 annot-version=v1.0 ATGAAATCTAAGCCTGAATACACCGTACCAAACGTGGCCCTTCTTCTTTCTTCTTCCTCCACAACTAGTACCCATCACCCCCACGACCCCCGGCGTTCGT ACCCATCAACTCCGGCTGTTCAGTCCGGCCAGTCGTCCTCAGCTCCTCTCCGTCAGTCCGGCGTTCGTCCTCGACTCCCCACCACTGTCGTCCTCTCGTC CTCCAACGTCAGCTCGTCGCCGTCACTCACCACCGTCGTCCCCACCACTGTCGTCCTCGACTCTCCACCTCCGTCAGTCCGGCGTTCGAAATCTCCCAGC TCTTGTGTTATGGCTGAAGTTACGTATTGGTATGTCCTTGGTGATGATCAACAGCAACTGGGACCTTATACATCTTCTGAGCTCCAACAGCATTTCTTAA GTGGCTACTTCCTCGAAAATACGCTTGTATGGTCCGAAGGAAGAAGCGAATGGCAGCCTTTATCATTAGTCCCTGAGTTGATATCACCGATTGCTCAACG CCGGTCAGATGTCTCTTCTTCAGCACCCACCAGCATGACTGGTGTCGCAGATGTCTCTAATGGTGATCATGAAGATGAATTTGAGAAATGGCAGAGAGAG GTCACTGAGGCGGAAGCAGAGGCAGACAAGTTGAAAAATGGATCTGCTGCGAGCACAGTTGAGACTGATAATGATGCAGTTGTATCATCTCCTCCGGACG ATGAGCAAGAATTCACAGATGATGATGGGACCACATACAAGTGGGATAAAAGTTTGAGAGTGTGGGTTCCTCAGATAGATGCGTTACTTCTGTTCCTTCT TTCCATTATCTCCTCTCTAACTGTTAACTGTTTCTCTGTATCTTGGAGCCTGGAGGAAGATGTAAAAAGCGTAAATGAGCAGTATCAGCCTGAAGATATG ACTTTCTCAAAGGAAGAGGAAGTTTTTCCAATCCTGAATGTTGGTGATGCATCCTCTGTAGCGAAAGAGCTCGGTGTTGCTGATGAAACAGTAGAATCAA AGAATGATGGGAAAAGGAAATTGCAGGAAACACTAACAGAGGAGAAGGATAAACCGGTTGACAAGAAGGAACCAAATAAACCACCGGATAGTTGGTTTGA ATTGAAAGTCAATACGCATGTTTATGTAACTGGGTTGCCTGACGATGTCACTGCTGAAGAAGTGGCTGAAGTGTTCTCCAAATGCGGAATCATTAAGGAG GTAGTACTGATTTTTCTTAATCCTGCTTGTTCTGATCCTGAAACAAAAAAACCTCGCCTGAAGATCTACATGGATAGAGAGACAGGACGAGTAAAAGGAG ATGCATTAGTTACATACTTAAAGGCAATTGATTGCTCTTCAGCTGGTTTCTGTATTTTGGAGGAGCCCTCAGTTGACCTTGCTTTACAAATATTAGATGG AACACCTTTACGCCCAGGTGGTACAACCCTTATGTCAGTCAGCAGAGCTAAATTTGAACAGAAAGGCGATAAATTTATTTCCAAAAAGGTAGATGGAAAC AAGAAGAAGAAACTGAAGAAGGTTGAGAACAGAATTCTTGGGTGGGGTGGGCGTGATGATGCAAAGGTCTCAATTCCTTCTACAGTTGTTTTACGGTACA TGTTTGCTCCGGCTGAGATGAGGGCTGATGAGAATTTGTGTTCCGAGCTAGAGGAGGATGTCAAAGAAGAATGCTCAAAGCTGGGCCCAGTTGATTCTGT CAAGGTGTGTGTAAATCATCCTCAGGGGGTTGTTCTGGTGAGATTTAAGGACAGGAAGGATGCCCAAAAGTGCATAGAGATGATGAACGGACGGTGGTTC GGGGGTCGACAGGTACATGCAAGCGAGGATGACGGAGTGGTTAATCATGCTATGGTGCGTGATTATGATGCTGACGCCCAGCGGCTGGAGCAGTTTGGTG CTGAACTTGAAGCAGACTGA
AA sequence Show only first row Show all	>Lus10026858 pacid=23142927 polypeptide=Lus10026858 locus=Lus10026858.g ID=Lus10026858.BGIv1.0 annot-version=v1.0 MKSKPEYTVPNVALLLSSSSTTSTHHPHDPRRSYPSTPAVQSGQSSSAPLRQSGVRPRLPTTVVLSSSNVSSSPSLTTVVPTTVVLDSPPPSVRRSKSPS SCVMAEVTYWYVLGDDQQQLGPYTSSELQQHFLSGYFLENTLVWSEGRSEWQPLSLVPELISPIAQRRSDVSSSAPTSMTGVADVSNGDHEDEFEKWQRE VTEAEAEADKLKNGSAASTVETDNDAVVSSPPDDEQEFTDDDGTTYKWDKSLRVWVPQIDALLLFLLSIISSLTVNCFSVSWSLEEDVKSVNEQYQPEDM TFSKEEEVFPILNVGDASSVAKELGVADETVESKNDGKRKLQETLTEEKDKPVDKKEPNKPPDSWFELKVNTHVYVTGLPDDVTAEEVAEVFSKCGIIKE VVLIFLNPACSDPETKKPRLKIYMDRETGRVKGDALVTYLKAIDCSSAGFCILEEPSVDLALQILDGTPLRPGGTTLMSVSRAKFEQKGDKFISKKVDGN KKKKLKKVENRILGWGGRDDAKVSIPSTVVLRYMFAPAEMRADENLCSELEEDVKEECSKLGPVDSVKVCVNHPQGVVLVRFKDRKDAQKCIEMMNGRWF GGRQVHASEDDGVVNHAMVRDYDADAQRLEQFGAELEAD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G16260		ELF9	EARLY FLOWERING 9, RNA binding...		Lus10026858 [exp]	0	1
AT5G16260		ELF9	EARLY FLOWERING 9, RNA binding...		Lus10020230 [exp]	3.9	0.8700
AT5G14610			DEAD box RNA helicase family p...		Lus10014553 [exp]	4.9	0.8886
AT5G50320		EAST1, AtELP3, ...	HISTONE ACETYLTRANSFERASE OF T...		Lus10001102 [exp]	9.3	0.8718
AT1G73380			unknown protein		Lus10031887 [exp]	9.7	0.8371
AT1G31600		AtTRM9	Arabidopsis thaliana tRNA meth...		Lus10037263 [exp]	10.7	0.8503
AT4G04885		PCFS4	PCF11P-similar protein 4 (.1)		Lus10020058 [exp]	18.6	0.7830
AT3G52190		AtPHF1, PHF1	phosphate transporter traffic ...		Lus10038651 [exp]	25.1	0.8581
AT4G26300		EMB1027	embryo defective 1027, Arginyl...		Lus10034982 [exp]	27.2	0.8498
AT1G75660		AtXRN3, XRN3	5'-3' exoribonuclease 3 (.1)		Lus10012434 [exp]	27.7	0.8405
AT3G59630			diphthamide synthesis DPH2 fam...		Lus10020375 [exp]	31.7	0.8415

Compare expression of checked genes

Lus10026858 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.