Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34270 372 / 6e-130 TIP41-like family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020231 [exp] 437 / 2e-156 AT4G34270 333 / 7e-116 TIP41-like family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G298500 [exp] 420 / 6e-149 AT4G34270 397 / 3e-140 TIP41-like family protein (.1) Potri.009G093200 [exp] 418 / 6e-148 AT4G34270 401 / 7e-142 TIP41-like family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04176 [flax] [poplar] TIP41 TIP41-like family
Representative CDS sequence Show only first row Show all	>Lus10026859 pacid=23142870 polypeptide=Lus10026859 locus=Lus10026859.g ID=Lus10026859.BGIv1.0 annot-version=v1.0 ATGGCCGAGGAGGTAGACGACAAGGACCTGAAAGCCGCCGGAGCTGAGCTTTTGACCGACGGCCTCCGCGGACTCCGTATTCATGGCTGGGAGATCGTCT CCAAGGCTGGCTCTATTCTCAACTCCTCCGCTGTTGAACATGGACGTTTGCTGCACGTACACCTCGGAACTCTTTGTTGTCACAAAGTGGTGGTGTTGGC CAAAGTTTGTGCCGGTTGTCCTGTGCCGTACTGGTGTAATATACATGCTCAATCTACTTGCAGGTGGGAGGAGAAACTGCAGACCTCTCACCTACCCGAG ATGGTGTTTGGCGACAGCTGTCTGGTTCTCAAACATATCAAGAGTGGCACCAAAATCCATTTTAATGCATTTGATGCGCTAACCGGTTGGAAGCAGGAAG CTTTACCCCCAGTTGAAGTTCCTGCTGCTGCACAATGGAAATTCAGAAGCAAGCCGTTCCAACAGGTGATACTAGATTATGATTATACATTCACGACACC ATACATTGGAAGTGAAACTATTGAGACCCAGTGTGAAAGTGGAGAACCCATTTCTGCAAGTGGCAGGCTTCAATGGGAGGATTGCAAGGAACGAATTGAT GTTGCTTCCCTAGCTTCAAAAGAGCCTATTCTTTTCTATGACGAGGTTGTTCTTTATGAAGATGAACTGGCTGATAATGGAGTGTCACTTTTAACAGTAA AAGTGAGAGTGATGCCAAGTTATTGGTTTCTTCTTTTGCGATTTTGGCTTAGAGTTGATGGAGTCCTGATGAGATTACGGGACACTCGCATCCATTGTGC TTTTAGTGACAGTCCCAAGCCTGTCATCCTTCGCGAAAGTTGCTGGAGACAAGCAACCTTCGAGGCTCTGTCTGCTAAAGGGTACCCCATTGATGACTCT GCTTACAGTGATCCTAACAACATCAGCCACAGGCTTCCAGTCGTTATGCATAGGACTCAAAAGCTTATAGGTCCCTTGTAA
AA sequence Show only first row Show all	>Lus10026859 pacid=23142870 polypeptide=Lus10026859 locus=Lus10026859.g ID=Lus10026859.BGIv1.0 annot-version=v1.0 MAEEVDDKDLKAAGAELLTDGLRGLRIHGWEIVSKAGSILNSSAVEHGRLLHVHLGTLCCHKVVVLAKVCAGCPVPYWCNIHAQSTCRWEEKLQTSHLPE MVFGDSCLVLKHIKSGTKIHFNAFDALTGWKQEALPPVEVPAAAQWKFRSKPFQQVILDYDYTFTTPYIGSETIETQCESGEPISASGRLQWEDCKERID VASLASKEPILFYDEVVLYEDELADNGVSLLTVKVRVMPSYWFLLLRFWLRVDGVLMRLRDTRIHCAFSDSPKPVILRESCWRQATFEALSAKGYPIDDS AYSDPNNISHRLPVVMHRTQKLIGPL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G34270			TIP41-like family protein (.1)		Lus10026859 [exp]	0	1
AT1G16470		PAB1	proteasome subunit PAB1 (.1.2)		Lus10036210 [exp]	3.3	0.8808
AT4G34270			TIP41-like family protein (.1)		Lus10020231 [exp]	4.5	0.8782
AT4G21800		QQT2	quatre-quart2, P-loop containi...		Lus10019602 [exp]	4.9	0.8788
AT1G05205			unknown protein		Lus10039669 [exp]	6.0	0.8790
AT5G50090			unknown protein		Lus10004229 [exp]	7.0	0.8746
AT4G27380			unknown protein		Lus10038579 [exp]	8.5	0.8281
AT4G17010			unknown protein		Lus10001160 [exp]	11.6	0.8734
AT5G19440			NAD(P)-binding Rossmann-fold s...		Lus10039595 [exp]	13.2	0.8780
AT5G59140			BTB/POZ domain-containing prot...		Lus10040746 [exp]	14.1	0.8745
AT3G01435			Expressed protein (.1)		Lus10003331 [exp]	30.1	0.8211

Compare expression of checked genes

Lus10026859 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.