Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G36890 237 / 2e-76 BGLU42 beta glucosidase 42 (.1.2) AT3G18070 155 / 1e-45 BGLU43 beta glucosidase 43 (.1.2) AT5G44640 150 / 4e-43 BGLU13 beta glucosidase 13 (.1) AT2G44450 146 / 1e-41 BGLU15 beta glucosidase 15 (.1) AT3G60130 145 / 2e-41 BGLU16 beta glucosidase 16 (.1.2.3) AT2G44480 142 / 9e-41 BGLU17 beta glucosidase 17 (.1.2) AT3G18080 144 / 1e-40 BGLU44 B-S glucosidase 44 (.1) AT5G24550 144 / 1e-40 BGLU32 beta glucosidase 32 (.1) AT5G24540 143 / 2e-40 BGLU31 beta glucosidase 31 (.1) AT5G42260 143 / 3e-40 BGLU12 beta glucosidase 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020232 [exp] 345 / 3e-118 AT5G36890 699 / 0.0 beta glucosidase 42 (.1.2) Lus10020234 [exp] 271 / 4e-94 AT5G36890 217 / 2e-69 beta glucosidase 42 (.1.2) Lus10031808 [exp] 160 / 9e-47 AT2G44480 560 / 0.0 beta glucosidase 17 (.1.2) Lus10031234 [exp] 159 / 4e-46 AT2G44480 563 / 0.0 beta glucosidase 17 (.1.2) Lus10031235 [exp] 158 / 9e-46 AT2G44450 590 / 0.0 beta glucosidase 15 (.1) Lus10004654 [exp] 150 / 5e-43 AT1G26560 773 / 0.0 beta glucosidase 40 (.1) Lus10037098 [exp] 149 / 2e-42 AT1G26560 785 / 0.0 beta glucosidase 40 (.1) Lus10009218 [exp] 150 / 5e-42 AT5G04240 993 / 0.0 EARLY FLOWERING 6, Zinc finger (C2H2 type) family protein / transcription factor jumonji (jmj) family protein (.1) Lus10037987 [exp] 149 / 1e-41 AT5G54570 662 / 0.0 beta glucosidase 41 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G178800 [exp] 270 / 5e-89 AT5G36890 714 / 0.0 beta glucosidase 42 (.1.2) Potri.004G040700 [exp] 163 / 5e-48 AT5G44640 548 / 0.0 beta glucosidase 13 (.1) Potri.T085301 [exp] 162 / 2e-47 AT5G44640 575 / 0.0 beta glucosidase 13 (.1) Potri.003G211100 [exp] 162 / 2e-47 AT5G44640 569 / 0.0 beta glucosidase 13 (.1) Potri.001G409900 [exp] 145 / 3e-41 AT5G54570 791 / 0.0 beta glucosidase 41 (.1) Potri.001G223900 [exp] 145 / 6e-41 AT2G44480 526 / 0.0 beta glucosidase 17 (.1.2) Potri.004G109699 [exp] 141 / 7e-41 AT5G44640 288 / 5e-94 beta glucosidase 13 (.1) Potri.012G049300 [exp] 143 / 2e-40 AT3G18080 831 / 0.0 B-S glucosidase 44 (.1) Potri.001G223500 [exp] 143 / 3e-40 AT2G44480 526 / 0.0 beta glucosidase 17 (.1.2) Potri.001G223800 [exp] 143 / 3e-40 AT2G44480 527 / 0.0 beta glucosidase 17 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00232 [flax] [poplar] Glyco_hydro_1 Glycosyl hydrolase family 1
Representative CDS sequence Show only first row Show all	>Lus10026861 pacid=23142935 polypeptide=Lus10026861 locus=Lus10026861.g ID=Lus10026861.BGIv1.0 annot-version=v1.0 ATGCCAGCTAGTCCTGTTAGAGCTTCAAAACACCATGGCTTTGTTGGGCTAAATCATTATACGTCAAGGTTCATTGCCCATGTACCAGGTGGTGGTGATG AAGAAACTAATTTCTATAAAGCACAATCGATGAAGAGGATTCATGAATGGGAAGACGGAGAACCAATTGGTGAGAAGGCTGCATCGGAGTGGCTATACGT TTGCCCATGGGGACTGAGGAAGGTCCTGAATTACGTAGCCAAGACATACAAATCCCCCAAAATATATATAACAGAGAATGGGATGGATGATGAAGATAGA GATGCGCCACTTGAGGAAATGTTGGATGATAAGATGAGAGTTCGGTACTTCGAAGGGTACCTTAAAGCAGTAGCAGAGGCAATCAGAGATGGAGTGCATG TGAAAGGGTATTTTGCATGGTCGTTGCTGGACAACTTCGAGTGGGCACAAGGTTACACCAAGCGATTTGGGATAGTGTACGTCGACTACAATGACGGGAA GCTGACTCGCCACCCAAAGTCTTCTGCATATTGGTTCTTGAGACCCTTGAGGAAAAGGCACAAAGCAAGGACTGAGCTGAGTCAGTGA
AA sequence Show only first row Show all	>Lus10026861 pacid=23142935 polypeptide=Lus10026861 locus=Lus10026861.g ID=Lus10026861.BGIv1.0 annot-version=v1.0 MPASPVRASKHHGFVGLNHYTSRFIAHVPGGGDEETNFYKAQSMKRIHEWEDGEPIGEKAASEWLYVCPWGLRKVLNYVAKTYKSPKIYITENGMDDEDR DAPLEEMLDDKMRVRYFEGYLKAVAEAIRDGVHVKGYFAWSLLDNFEWAQGYTKRFGIVYVDYNDGKLTRHPKSSAYWFLRPLRKRHKARTELSQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G36890		BGLU42	beta glucosidase 42 (.1.2)		Lus10026861 [exp]	0	1
AT3G49000			RNA polymerase III subunit RPC...		Lus10033989 [exp]	5.5	0.7210
AT2G23093			Major facilitator superfamily ...		Lus10014854 [exp]	6.2	0.7429
AT3G47990		SIS3	SUGAR-INSENSITIVE 3 (.1)		Lus10002369 [exp]	6.9	0.7127
AT5G09630			LisH/CRA/RING-U-box domains-co...		Lus10007106 [exp]	7.1	0.7813
AT4G19900			alpha 1,4-glycosyltransferase ...		Lus10017137 [exp]	10.2	0.6974
AT3G58600			Adaptin ear-binding coat-assoc...		Lus10000356 [exp]	11.3	0.7488
AT4G26620			Sucrase/ferredoxin-like family...		Lus10022532 [exp]	12.6	0.6692
AT5G42470			unknown protein		Lus10033139 [exp]	14.0	0.7202
AT3G58160		XI-16, MYA3, AT...	MYOSIN XI-16, MYOSIN A3, MYOSI...		Lus10033865 [exp]	14.0	0.7308
AT5G36930			Disease resistance protein (TI...		Lus10029811 [exp]	20.3	0.6429

Compare expression of checked genes

Lus10026861 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.