Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16270 353 / 4e-104 SYN4, ATRAD21.3 ARABIDOPSIS HOMOLOG OF RAD21 3, sister chromatid cohesion 1 protein 4 (.1) AT3G59550 136 / 1e-32 ATSYN3, SYN3, ATRAD21.2 SISTER CHROMATID COHESION 1 PROTEIN 3, Rad21/Rec8-like family protein (.1) AT5G40840 109 / 6e-24 SYN2, ATRAD21.1 Sister chromatid cohesion 1 \(SCC1\) protein homolog 2, Rad21/Rec8-like family protein (.1.2.3) AT5G05490 100 / 4e-21 SYN1 BP5, SYN1 BP2, SYN1., DIF1, ATREC8 SYNAPTIC 1, DETERMINATE, INFERTILE 1, Rad21/Rec8-like family protein (.1.2) AT4G05360 50 / 1e-05 Zinc knuckle (CCHC-type) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020235 [exp] 1896 / 0 AT5G16270 371 / 4e-110 ARABIDOPSIS HOMOLOG OF RAD21 3, sister chromatid cohesion 1 protein 4 (.1) Lus10020233 [exp] 1251 / 0 AT5G16270 308 / 7e-91 ARABIDOPSIS HOMOLOG OF RAD21 3, sister chromatid cohesion 1 protein 4 (.1) Lus10037478 [exp] 138 / 5e-33 AT3G59550 315 / 4e-97 SISTER CHROMATID COHESION 1 PROTEIN 3, Rad21/Rec8-like family protein (.1) Lus10023028 [exp] 133 / 2e-31 AT5G16270 327 / 2e-101 ARABIDOPSIS HOMOLOG OF RAD21 3, sister chromatid cohesion 1 protein 4 (.1) Lus10022338 [exp] 107 / 3e-23 AT5G40840 179 / 1e-46 Sister chromatid cohesion 1 \(SCC1\) protein homolog 2, Rad21/Rec8-like family protein (.1.2.3) Lus10041587 [exp] 105 / 1e-22 AT5G40840 181 / 2e-47 Sister chromatid cohesion 1 \(SCC1\) protein homolog 2, Rad21/Rec8-like family protein (.1.2.3) Lus10036324 [exp] 44 / 0.0004 AT1G27150 276 / 6e-91 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G178600 [exp] 907 / 0 AT5G16270 417 / 2e-127 ARABIDOPSIS HOMOLOG OF RAD21 3, sister chromatid cohesion 1 protein 4 (.1) Potri.008G078500 [exp] 905 / 0 AT5G16270 407 / 2e-123 ARABIDOPSIS HOMOLOG OF RAD21 3, sister chromatid cohesion 1 protein 4 (.1) Potri.001G225600 [exp] 155 / 2e-38 AT3G59550 402 / 5e-130 SISTER CHROMATID COHESION 1 PROTEIN 3, Rad21/Rec8-like family protein (.1) Potri.017G067400 [exp] 120 / 2e-27 AT5G40840 218 / 6e-60 Sister chromatid cohesion 1 \(SCC1\) protein homolog 2, Rad21/Rec8-like family protein (.1.2.3) Potri.008G072300 [exp] 62 / 2e-09 AT5G05490 428 / 1e-142 SYNAPTIC 1, DETERMINATE, INFERTILE 1, Rad21/Rec8-like family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04825 [flax] [poplar] Rad21_Rec8_N N terminus of Rad21 / Rec8 like protein CL0157 [flax] [poplar] Kleisin PF04824 [flax] [poplar] Rad21_Rec8 Conserved region of Rad21 / Rec8 like protein
Representative CDS sequence Show only first row Show all	>Lus10026862 pacid=23142882 polypeptide=Lus10026862 locus=Lus10026862.g ID=Lus10026862.BGIv1.0 annot-version=v1.0 ATGTTTTATTCCCAGTTCATATTGGCCAAGAAAGGGCCTTTGGGTACAATATGGATAGCTGCACATTTGGAAAGGAAGCTGCGCAAGAACCAAGTTGCTG ATACTGATATTGGCTTCTCTGTAGATTCAATTCTTTCCCCTGATGTACCAATCGCACTAAGACTGTCCAGTCATCTTCTGGTTGGTGTGGTGAGGATATA TTCTAGGAAGGTGAATTACCTTTTCGATGATTGCAGTGAGGCTTTGCTAAAGATAAAGCAAGCTTTTCGATCCACTGCAGTTGATTTACCACCTGAAGAG TCAACTGCTCCCTATAACTCTATCACCTTGCCTGAAACTTTTGATCTTGATGATTTTGAACTTCCCGATGATGATATTCTCCAAGGTAATTATGTTGACC ATCACGTTAGTTCAAAGGAGCAAATCACCCTTCAAGACTCAATGGAGGGTGTGGTTTACACCACATCTCAATTTGGATTGGATGATTGTGCTGATCTGAT GCATGCTCCTCGAGCAATCATTAAACTTCAGTTTGTTATGGTTTCAGAGCGTTTTGGAGATGGTGATGCTTCTCAAGTTGGTTTGGACCTTGAAGAGGAT TTGTTCCTTGACAAGGCTGCAGCTTCAGGAACCAATGGGATTTTAGAGATGTCTATCAATGATGCTGAAGATCCAAAAAGAGATGAAACCGACCACAGAG CTGCAGGATTATCTGAATCCTCTCCTGTCAATAATATTGTAAACGAGATTGGGGATCGAATTACAAATGCAGAGCTTATTGACTATGCACAAGCTCCATC TACTCCTGTATTAGCAGAAGAGCCAAACCTATCCAGTGTTCAGCATGGGCTGGTCTGTGATGATCATTTAGAATCTGAAGATCGCAATTCAGCAGATATA CATGGTGTGGAGAGCACAGAAAATGTTTGTAGCAAGATTGATCATCGACACAGGGATGAAACAATTGATTCATCAGTAGGTGATCGTATTCAATGCCTTG AAGAAGAGCAGGATACATTTGTGGCTTCTGACTTAACAATAAATAAAGCAAAGCTAGAAGGTGCTGTAGGCTCTACTCCAGTGTCTATGGAGTACATACA GGAAGATGGAACTACTGGTGAGTTGCAGGATGCAAATAAGTTGGACAAAAAAAATGATGATGTAGGAGGGGATAAACAACCTACTCACCCGTTAGAGTCA ACTGACGAGAAATGTGAAAAACCATTTGGGGCCAGATTGCTTGGAAGTTGTAATACTGATGTTTCGAGAGATGTTGAAGGACAATTGCTTGAAACTTTTT CTGCATCTGAGTTGCCTCATGCTCCTGGGCATTCTAATACCGGAACTCAGGGAGAAGTGAGTTTAAACATTGATATTCACAACAGAAAAATGTCTTCTTC TACCAACATGGTTGGATTGCAAGCTTGCAACTCAGTACCATCCTCCGCAGACCCATCAAAAACAGAAGATGTCCCATGTTTTCATGGAAATTCTACTGAT ATGCAAGGCGTGGAGTCTCATTTGGTTGATAACACCACGTTGGAGAAGGCTCATGATGTACAGCCAGATTGCGAGGGAGAAATCTTGGATGGAAGCCTTA GACTGGATGAAAACCTAGTCAATGAGATCCCAAAGGGTGACCAATATGAGAAATTGAATGAAGTGCCTGCACCTGAGAAGATGCTTTCTGTACCAGAGAA GATTCTTGATGGACCTGATCAGTTCATTGGTGCATTAACACCAGCTAGTGAATTCTTAGAAAGCGCTAATGGGACTAGTGTTGGTAACAGAGTTTCTGGG AGGAAGAGAAGCTTTACAGAAAGTACCTTAAACAGGGGGGATATAAATTCTGCGGAGTCTCTTGGACAATCTAGATCCAAAAGGACCCAAGAGACAATTC CTGATGATGATGATTTGCTGACTTCTATTTTAGTTGGAAGAAAATCTTCAAATTTGAGGCTGAACCCTAGTCCACCTGCAGCAGAGGTGAAATCTGCAAA ACGGCCTCGTCCCAGTTCCCGTGTTAGTGCCTCGAAGAGGAAAGTCCTCATGGATGAGAGTATGGTTCTGCATGGCGATACTATACGCCAGCAATTGACT AATACTGAGGACATACGTCGTGTACGAAAGAAGGCTCCTTGCACACGTGTTGAGATATTGATGTTACAAAGACAGCATTTGGAAGATCAAGTTTTTAATG AATCAGTATTAACAGGTATGGTAAAAGACTTGGCGTGTTTGCACAATGGAACCTTTGATTTGAGGGGTATTCGGATCATCAAACATGATCCATCTTCAGA AATTAGCATGCGTGTACAACGTGCTACTACACTTATTAATCAATATGGTGATTTGGAGAAGAGCACTGAACCTGTGGACTGTATAGCAGTTGATGATGAG CAACCAATTGGGCTTCATGTCGTATCTGAGGAAGTGCAAGGTGAGGAGCAATGTCTTGATGCTAGTGTTGCTGGTAGTGAAAGGCAACCAGAGGCTGATG GTAGTGTTGCTGAATTGGGCGTGTCAGGTCATGATCATTCTGATGGCAAACCAGAGATGGGTATTGATGAGGTGAATGCTGAAGAGACTGATGCTCTGAA TGGATCAGAGGTATCTCTGGACCATGTTTGCCTACACAAGTCATACAATCCAGCCATGCCTTCTGTCGATGCTTCTCTTTTGTGTAAAAGCAGCGGTGAA AAGGCGTCTGAAAAAACGAATGCCCTAAACCAGCCATCGGATAAGACAGTTATTGAACTAATTCAGGATGAAACCCGCTTGAAGGACACTGAAGTTGAAG CGTTGGGCCATACTGAAGATGATACTGTTGCAGTGAGAACTGAATTGACTCCAGAGGAGCTTCTAAAGGAGGAATGTATAGATGGCCCTGCAATTCAAAC TGATGTTGATCAAGCAGATTCTGATGCAAACAAAACATTGGGCACTATCGGATGCATGGACCTTCCTTTGGGAAACGAGCAGCAGGCACTGGAAGTCACT GAAAATGGACAAGTTAGGCTTGGTAGTGAGGAGGAAGGTGATTCTACTGGCTTGGAGCATATTGTTGAGCAGCAGGCACTGGAAGTAATTGAAAATGGAC AAGTTAGGCTTGGTAGTGAGGAGGAAGGTGATACTACTGTCTTGGAGCACATTGTCAAGGAAAGTGAAGAAATGAGAACGGACCTTGTTCATTCTGTTGA ACGGGATACTGATGTTAACGATGTAGTTTCTCAAGAAGAAGCCAATTATCAAACTACCACGGATGCAGATCGTCCTACTTTTGAAGATCAGCAAGATTTT CCAGACGCAGCATTTGCCAATGACACAGATTTTCTGAATGTTGACGACGATGAGATGGAGGAAGAAGATGACAATGACATGCCTTCTGTTGAAGATACAC GCCTTCTCGATAATAGTGGATGGTCGTCCCGGACTAGAGCTGTTGCAAATTACCTCCAAACTCTGTTCGATGGGGAGGAATCAGGTCAAGGGAGGAAAGT AGTTTCGATGGACAACCTACTAGCTGGTAAAACAAGGAAAGAAGCGTCGAGGATGTTTTTCGAGACATTGGTGCTTAAAACAAGGGACTACATCCAAGTG GAGCAAGGGAAGCCATTTGACAACATTAACTTGAAGCCGAGAGTAAAGCTAATGAAGTCGGACTTCTAA
AA sequence Show only first row Show all	>Lus10026862 pacid=23142882 polypeptide=Lus10026862 locus=Lus10026862.g ID=Lus10026862.BGIv1.0 annot-version=v1.0 MFYSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGFSVDSILSPDVPIALRLSSHLLVGVVRIYSRKVNYLFDDCSEALLKIKQAFRSTAVDLPPEE STAPYNSITLPETFDLDDFELPDDDILQGNYVDHHVSSKEQITLQDSMEGVVYTTSQFGLDDCADLMHAPRAIIKLQFVMVSERFGDGDASQVGLDLEED LFLDKAAASGTNGILEMSINDAEDPKRDETDHRAAGLSESSPVNNIVNEIGDRITNAELIDYAQAPSTPVLAEEPNLSSVQHGLVCDDHLESEDRNSADI HGVESTENVCSKIDHRHRDETIDSSVGDRIQCLEEEQDTFVASDLTINKAKLEGAVGSTPVSMEYIQEDGTTGELQDANKLDKKNDDVGGDKQPTHPLES TDEKCEKPFGARLLGSCNTDVSRDVEGQLLETFSASELPHAPGHSNTGTQGEVSLNIDIHNRKMSSSTNMVGLQACNSVPSSADPSKTEDVPCFHGNSTD MQGVESHLVDNTTLEKAHDVQPDCEGEILDGSLRLDENLVNEIPKGDQYEKLNEVPAPEKMLSVPEKILDGPDQFIGALTPASEFLESANGTSVGNRVSG RKRSFTESTLNRGDINSAESLGQSRSKRTQETIPDDDDLLTSILVGRKSSNLRLNPSPPAAEVKSAKRPRPSSRVSASKRKVLMDESMVLHGDTIRQQLT NTEDIRRVRKKAPCTRVEILMLQRQHLEDQVFNESVLTGMVKDLACLHNGTFDLRGIRIIKHDPSSEISMRVQRATTLINQYGDLEKSTEPVDCIAVDDE QPIGLHVVSEEVQGEEQCLDASVAGSERQPEADGSVAELGVSGHDHSDGKPEMGIDEVNAEETDALNGSEVSLDHVCLHKSYNPAMPSVDASLLCKSSGE KASEKTNALNQPSDKTVIELIQDETRLKDTEVEALGHTEDDTVAVRTELTPEELLKEECIDGPAIQTDVDQADSDANKTLGTIGCMDLPLGNEQQALEVT ENGQVRLGSEEEGDSTGLEHIVEQQALEVIENGQVRLGSEEEGDTTVLEHIVKESEEMRTDLVHSVERDTDVNDVVSQEEANYQTTTDADRPTFEDQQDF PDAAFANDTDFLNVDDDEMEEEDDNDMPSVEDTRLLDNSGWSSRTRAVANYLQTLFDGEESGQGRKVVSMDNLLAGKTRKEASRMFFETLVLKTRDYIQV EQGKPFDNINLKPRVKLMKSDF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G16270		SYN4, ATRAD21.3	ARABIDOPSIS HOMOLOG OF RAD21 3...		Lus10026862 [exp]	0	1
AT5G16270		SYN4, ATRAD21.3	ARABIDOPSIS HOMOLOG OF RAD21 3...		Lus10020235 [exp]	1.0	0.9684
AT4G27510			unknown protein		Lus10004528 [exp]	1.4	0.9172
AT3G54460			SNF2 domain-containing protein...		Lus10024158 [exp]	2.8	0.9016
AT1G65470		NFB2, FAS1	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10003491 [exp]	3.9	0.9010
AT1G45231			S-adenosyl-L-methionine-depend...		Lus10009752 [exp]	4.2	0.8971
AT5G56930	C3HZnF	EMB1789	embryo defective 1789, CCCH-ty...		Lus10028950 [exp]	4.9	0.9023
AT3G09100			mRNA capping enzyme family pro...		Lus10035534 [exp]	7.5	0.8914
AT4G02570		AXR6, ATCUL1	AUXIN RESISTANT 6, cullin 1 (....		Lus10024562 [exp]	7.9	0.8905
AT2G32700		MUM1, LUH	MUCILAGE-MODIFIED 1, LEUNIG_ho...		Lus10032614 [exp]	7.9	0.8666
AT5G51340			Tetratricopeptide repeat (TPR)...		Lus10019124 [exp]	8.9	0.8672

Compare expression of checked genes

Lus10026862 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.