Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G65610 699 / 0 ATGH9A2 ,KOR2 KORRIGAN 2, ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9A2, Six-hairpin glycosidases superfamily protein (.1) AT5G49720 603 / 0 TSD1, IRX2, DEC, RSW2, OR16PEP, KOR1 ,AtGH9A1 TUMOROUS SHOOT DEVELOPMENT 1, RADIALLY SWOLLEN 2, KORRIGAN 1, KORRIGAN, IRREGULAR XYLEM 2, DEFECTIVE CYTOKINESIS, glycosyl hydrolase 9A1 (.1) AT4G24260 551 / 0 ATGH9A3 ,KOR3 glycosyl hydrolase 9A3 (.1) AT1G75680 317 / 6e-101 ATGH9B7 glycosyl hydrolase 9B7 (.1) AT1G19940 305 / 2e-96 ATGH9B5 glycosyl hydrolase 9B5 (.1) AT1G02800 276 / 3e-85 ATCEL2 cellulase 2 (.1) AT1G64390 278 / 5e-85 ATGH9C2 glycosyl hydrolase 9C2 (.1) AT4G11050 278 / 9e-85 ATGH9C3 glycosyl hydrolase 9C3 (.1) AT4G02290 270 / 4e-83 ATGH9B13 glycosyl hydrolase 9B13 (.1) AT4G23560 264 / 3e-81 ATGH9B15 glycosyl hydrolase 9B15 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012162 [exp] 606 / 0 AT5G49720 989 / 0.0 TUMOROUS SHOOT DEVELOPMENT 1, RADIALLY SWOLLEN 2, KORRIGAN 1, KORRIGAN, IRREGULAR XYLEM 2, DEFECTIVE CYTOKINESIS, glycosyl hydrolase 9A1 (.1) Lus10026275 [exp] 598 / 0 AT5G49720 986 / 0.0 TUMOROUS SHOOT DEVELOPMENT 1, RADIALLY SWOLLEN 2, KORRIGAN 1, KORRIGAN, IRREGULAR XYLEM 2, DEFECTIVE CYTOKINESIS, glycosyl hydrolase 9A1 (.1) Lus10010029 [exp] 419 / 1e-140 AT5G49720 465 / 1e-158 TUMOROUS SHOOT DEVELOPMENT 1, RADIALLY SWOLLEN 2, KORRIGAN 1, KORRIGAN, IRREGULAR XYLEM 2, DEFECTIVE CYTOKINESIS, glycosyl hydrolase 9A1 (.1) Lus10007584 [exp] 413 / 7e-140 AT5G49720 565 / 0.0 TUMOROUS SHOOT DEVELOPMENT 1, RADIALLY SWOLLEN 2, KORRIGAN 1, KORRIGAN, IRREGULAR XYLEM 2, DEFECTIVE CYTOKINESIS, glycosyl hydrolase 9A1 (.1) Lus10036331 [exp] 416 / 6e-138 AT5G49720 483 / 6e-164 TUMOROUS SHOOT DEVELOPMENT 1, RADIALLY SWOLLEN 2, KORRIGAN 1, KORRIGAN, IRREGULAR XYLEM 2, DEFECTIVE CYTOKINESIS, glycosyl hydrolase 9A1 (.1) Lus10018918 [exp] 404 / 4e-133 AT5G49720 423 / 1e-140 TUMOROUS SHOOT DEVELOPMENT 1, RADIALLY SWOLLEN 2, KORRIGAN 1, KORRIGAN, IRREGULAR XYLEM 2, DEFECTIVE CYTOKINESIS, glycosyl hydrolase 9A1 (.1) Lus10028619 [exp] 395 / 2e-129 AT5G49720 410 / 3e-135 TUMOROUS SHOOT DEVELOPMENT 1, RADIALLY SWOLLEN 2, KORRIGAN 1, KORRIGAN, IRREGULAR XYLEM 2, DEFECTIVE CYTOKINESIS, glycosyl hydrolase 9A1 (.1) Lus10034515 [exp] 306 / 2e-96 AT1G19940 688 / 0.0 glycosyl hydrolase 9B5 (.1) Lus10033156 [exp] 303 / 1e-95 AT1G19940 687 / 0.0 glycosyl hydrolase 9B5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G079500 [exp] 808 / 0 AT1G65610 699 / 0.0 KORRIGAN 2, ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9A2, Six-hairpin glycosidases superfamily protein (.1) Potri.010G177300 [exp] 801 / 0 AT1G65610 724 / 0.0 KORRIGAN 2, ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9A2, Six-hairpin glycosidases superfamily protein (.1) Potri.001G078900 [exp] 610 / 0 AT5G49720 904 / 0.0 TUMOROUS SHOOT DEVELOPMENT 1, RADIALLY SWOLLEN 2, KORRIGAN 1, KORRIGAN, IRREGULAR XYLEM 2, DEFECTIVE CYTOKINESIS, glycosyl hydrolase 9A1 (.1) Potri.003G151700 [exp] 603 / 0 AT5G49720 910 / 0.0 TUMOROUS SHOOT DEVELOPMENT 1, RADIALLY SWOLLEN 2, KORRIGAN 1, KORRIGAN, IRREGULAR XYLEM 2, DEFECTIVE CYTOKINESIS, glycosyl hydrolase 9A1 (.1) Potri.005G188500 [exp] 406 / 5e-134 AT5G49720 418 / 9e-139 TUMOROUS SHOOT DEVELOPMENT 1, RADIALLY SWOLLEN 2, KORRIGAN 1, KORRIGAN, IRREGULAR XYLEM 2, DEFECTIVE CYTOKINESIS, glycosyl hydrolase 9A1 (.1) Potri.005G237700 [exp] 313 / 2e-99 AT1G19940 678 / 0.0 glycosyl hydrolase 9B5 (.1) Potri.002G023900 [exp] 306 / 8e-97 AT1G19940 672 / 0.0 glycosyl hydrolase 9B5 (.1) Potri.005G115400 [exp] 296 / 1e-92 AT1G19940 586 / 0.0 glycosyl hydrolase 9B5 (.1) Potri.001G356000 [exp] 293 / 6e-92 AT2G32990 736 / 0.0 glycosyl hydrolase 9B8 (.1) Potri.014G157600 [exp] 286 / 8e-89 AT2G32990 800 / 0.0 glycosyl hydrolase 9B8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0059 [flax] [poplar] 6_Hairpin PF00759 [flax] [poplar] Glyco_hydro_9 Glycosyl hydrolase family 9
Representative CDS sequence Show only first row Show all	>Lus10026863 pacid=23142793 polypeptide=Lus10026863 locus=Lus10026863.g ID=Lus10026863.BGIv1.0 annot-version=v1.0 ATGCGATCGGGTGCGAATTACTGGGGAGGAACACTGGAACTAACAGACGGAAATGACGGCGAGGAAGAAGAGCATAGACGGCGGAAGATGGCGGAGCTGG ACAGAGGAGCACTGATATCACAGCCGGCAGAGATTAACAACAACTACAATCATTTGGACGAGACGCAGCAGAGTTGGCTGCTGTACCCTGAAGCATCGAG AAAAGGGAACAAGAAAAATAAAAAGGTGAACTTGGGTTGCGTGGTGTGCAGCCGCAGGGCGTTCTGGTGGACTCTCGCTGCCATTGGATTTGCAATCGTA GTCATAGCTCTCCCGATCATCGTGAAAGTCTTAACGAAGCACAAGCCTCGCCCGACTGCTCCGGATAACTACACCCTCGCGCTCAACAAGGCCCTCCTCT TCTTCAACGCCCAAAAGTCAGGGAAGTTGGGGAAGAAGAATGGGGTACCATGGAGAGGGGACTCAGGGCTACAAGACGGAAACGACACTGTATTCAAATG GGGGCTTGTAGGAGGATATTACGACGCAGGGGATAATATCAAGTTCAATTTCCCAATGTCCTACGCCATGACCATGTTAAGCTGGAGCGTAATCGAGTAC AGCCACAAGTACAAGGCAATTGGCGAATACGACCACGTCCGCGACTTGATCAAACACGGAACCGATTACCTACTTCTCACCTTCAACTCTTCCGCCACCA AAATCGGCCGAATCTACGCTCAGGTCGGGGTAAGCCTTAACGAATCCAGTACCCCGGACGACCACCGTTGTTGGGAGAGGCCCGAGGACATGGATTACAG GAGACCTTCCATCTCAATCAACGCAGGCCCCGATCTCGCTGGCGAAATGGCCGCAGCATTGGCCTCCGCGTCCATCGTTTTCAGAGACAGTAACAATGCC TACTCGAAGCGCCTGGCGAGAGGGGCCGAGACGTTGTTTTGGTTCGCCAGGGACCAAGGTCGGAGGCGCCCTTACTCCCGCGGGAACCAATTGATAGAGC AGTTCTATAATTCGAGCGGGTATTATGACGAGTATATGTGGAGTGGAGCTTGGGTTTACTATGCCACTGGTAACAAAACGTACCTCGAGCTGGCTACTAA TCCGGGGATTCCAAAGAACTCAAAGGCCTTCTTTGGAATCCCCGATTTGAGCGTTCCGAGCTGGGACAATAAATTGCCTGCGGCTATGTTGTTGCTGACA AGGTACAGAATCTTCCTAAGTCCGGGATACCCATACGAGGATATGTTGCGGATGTACCATAATGTCACAACTCTTAACATGTGCTCCTATCTACGCCAGT ATCAAGTCTTCAACTGGACCAAAGGGGGATTGATACAGCTAAACCATGGAAGAGGACAACCACTACAGTACGTAGCGAACGCAGCCTTCTTAGCATCACT CTTCGTCGACTACCTGAACGCCACCGACGTACCTGGGTTCAACTGCGGCCCAAACTTCATCCCTCTGGCTGAGCTTCGCAAATTCTCGACTTCTCAGGCG GACTACATACTGGGGAAGAACCCGATGAAAATGAGCTACGTGGTGGGATACGGCGACAAGTTCCCGAGGAAGGTGCATCACAGGGGAGCATCAATCCCGA ACAACAAGAGGAAGTACTCGTGCGAATCTGGGTGGAAGTGGAAGGACAGTCCCAAACCGAATCCCAACAATATCACCGGCGCAATGGTCGGCGGGCCCGA TAGATTCGACAAGTTTACCGATTCTAGAAACAATTATAGTTTCACGGAGCCCACCTTGGTTGGGAACGCGGCTCTTGTTGCGTCGCTTGTATCGCTCACG ACCACCGGCCGTAATTACGGCATCGACAAGAATACAATTTTCTCTGCTGTGCCGCCGCTTTACCCTCAGAGCTCGCCGCCTCCTCCGCCTTGGAAGCCTT GA
AA sequence Show only first row Show all	>Lus10026863 pacid=23142793 polypeptide=Lus10026863 locus=Lus10026863.g ID=Lus10026863.BGIv1.0 annot-version=v1.0 MRSGANYWGGTLELTDGNDGEEEEHRRRKMAELDRGALISQPAEINNNYNHLDETQQSWLLYPEASRKGNKKNKKVNLGCVVCSRRAFWWTLAAIGFAIV VIALPIIVKVLTKHKPRPTAPDNYTLALNKALLFFNAQKSGKLGKKNGVPWRGDSGLQDGNDTVFKWGLVGGYYDAGDNIKFNFPMSYAMTMLSWSVIEY SHKYKAIGEYDHVRDLIKHGTDYLLLTFNSSATKIGRIYAQVGVSLNESSTPDDHRCWERPEDMDYRRPSISINAGPDLAGEMAAALASASIVFRDSNNA YSKRLARGAETLFWFARDQGRRRPYSRGNQLIEQFYNSSGYYDEYMWSGAWVYYATGNKTYLELATNPGIPKNSKAFFGIPDLSVPSWDNKLPAAMLLLT RYRIFLSPGYPYEDMLRMYHNVTTLNMCSYLRQYQVFNWTKGGLIQLNHGRGQPLQYVANAAFLASLFVDYLNATDVPGFNCGPNFIPLAELRKFSTSQA DYILGKNPMKMSYVVGYGDKFPRKVHHRGASIPNNKRKYSCESGWKWKDSPKPNPNNITGAMVGGPDRFDKFTDSRNNYSFTEPTLVGNAALVASLVSLT TTGRNYGIDKNTIFSAVPPLYPQSSPPPPPWKP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G65610		ATGH9A2 ,KOR2	KORRIGAN 2, ARABIDOPSIS THALIA...		Lus10026863 [exp]	0	1
AT4G12300		CYP706A4	"cytochrome P450, family 706, ...		Lus10032026 [exp]	1.0	0.9688
AT2G14095			unknown protein		Lus10001299 [exp]	2.0	0.9520
AT1G24130			Transducin/WD40 repeat-like su...		Lus10029206 [exp]	2.4	0.9300
AT5G59530			2-oxoglutarate (2OG) and Fe(II...		Lus10033875 [exp]	9.8	0.9235
AT1G79700	AP2_ERF		Integrase-type DNA-binding sup...		Lus10041618 [exp]	10.4	0.9221
AT1G09480			NAD(P)-binding Rossmann-fold s...		Lus10016389 [exp]	17.0	0.8776
AT4G37320		CYP81D5	"cytochrome P450, family 81, s...		Lus10024078 [exp]	17.9	0.9294
					Lus10008301 [exp]	18.4	0.9255
AT2G18150			Peroxidase superfamily protein...		Lus10028337 [exp]	19.1	0.9240
AT3G57270		BG1	"beta-1,3-glucanase 1", beta-1...		Lus10014108 [exp]	20.2	0.9075

Compare expression of checked genes

Lus10026863 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.