Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31115 225 / 7e-74 Protein of unknown function (DUF1997) (.1), Protein of unknown function (DUF1997) (.2) AT5G04440 87 / 2e-20 Protein of unknown function (DUF1997) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025683 [exp] 166 / 3e-51 AT4G31115 159 / 1e-48 Protein of unknown function (DUF1997) (.1), Protein of unknown function (DUF1997) (.2) Lus10018151 [exp] 165 / 6e-51 AT4G31115 156 / 1e-47 Protein of unknown function (DUF1997) (.1), Protein of unknown function (DUF1997) (.2) Lus10037929 [exp] 92 / 7e-22 AT5G04440 342 / 1e-118 Protein of unknown function (DUF1997) (.1) Lus10038659 [exp] 87 / 2e-20 AT5G04440 345 / 6e-121 Protein of unknown function (DUF1997) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G179800 [exp] 252 / 1e-84 AT4G31115 205 / 4e-66 Protein of unknown function (DUF1997) (.1), Protein of unknown function (DUF1997) (.2) Potri.008G030300 [exp] 91 / 5e-22 AT5G04440 342 / 5e-120 Protein of unknown function (DUF1997) (.1) Potri.010G230900 [exp] 84 / 2e-19 AT5G04440 330 / 2e-115 Protein of unknown function (DUF1997) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09366 [flax] [poplar] DUF1997 Protein of unknown function (DUF1997)
Representative CDS sequence Show only first row Show all	>Lus10026864 pacid=23142890 polypeptide=Lus10026864 locus=Lus10026864.g ID=Lus10026864.BGIv1.0 annot-version=v1.0 ATGTTGACGAGAAGTAGGAATTGGGCAGCTGGAAATCCGCACTCTTTAGCTCTGCATAATCATCTCGAACCCTCAACCATAATCTGGAAAAGTAGAAGTG CAAATGTTAAGCAACGTATGCGAATGCGAGTCAGTAACAGCGACTCATCGAAGAGAGCAAATTTGTATGCGTCAAGAAAGGAAAGGGTTAAGCTGGATTC TAACGGCGGAGGAGGGTATCAGATCAGTGACTTCCTTAGCCACTCGTCAGGAATCAAAGCGATCTTGAACACCAAAGCTTTGCAGAGCTTTCAATCGCTC GATGATGCGAATACATACAGATGCATTCTCCCCAAAATTAAACTTCTCAACTTTGAAGCGGCTCCGGTTCTGGATTTGAGAGTTACACCAACTGATGAAG ATTGCACAATCGAGATGCTTTCATGCAAGCTCCGGGGTTCGGAGGTTATAGAGCAACAGAATGAGCGTTTTTCAGCCTTGATGGTAAATCGGATGGTATG GGATACAGAAAACTCAGAACCGTTTTTGGAGGTTGACGTGAAGTTGAATCTCACACTTGAGATCTATACACAGCCCTTCATACTGCTACCAACATCTGCA GTTGAAGGACCTGGAAATTTAGTGATGCAAGCTCTGGTGGATAGGTTGGTCCCTTTGCTTTTGGAGCAGCTACTCCGAGACTATCACGATTGGGCAGAGA AGCAGAAGCAGCCTCCAAATCTCATCCCATAA
AA sequence Show only first row Show all	>Lus10026864 pacid=23142890 polypeptide=Lus10026864 locus=Lus10026864.g ID=Lus10026864.BGIv1.0 annot-version=v1.0 MLTRSRNWAAGNPHSLALHNHLEPSTIIWKSRSANVKQRMRMRVSNSDSSKRANLYASRKERVKLDSNGGGGYQISDFLSHSSGIKAILNTKALQSFQSL DDANTYRCILPKIKLLNFEAAPVLDLRVTPTDEDCTIEMLSCKLRGSEVIEQQNERFSALMVNRMVWDTENSEPFLEVDVKLNLTLEIYTQPFILLPTSA VEGPGNLVMQALVDRLVPLLLEQLLRDYHDWAEKQKQPPNLIP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G31115			Protein of unknown function (D...		Lus10026864 [exp]	0	1
AT5G37360			unknown protein		Lus10004762 [exp]	2.0	0.9599
AT3G10060			FKBP-like peptidyl-prolyl cis-...		Lus10027729 [exp]	2.0	0.9622
AT5G44520			NagB/RpiA/CoA transferase-like...		Lus10008059 [exp]	3.0	0.9589
AT1G49975			unknown protein		Lus10033771 [exp]	3.9	0.9538
AT4G39710		PnsL4, FKBP16-2	Photosynthetic NDH subcomplex...		Lus10016811 [exp]	8.2	0.9559
AT3G45050			unknown protein		Lus10041331 [exp]	8.4	0.9490
AT1G08980		ATTOC64-I, ATAM...	ARABIDOPSIS THALIANA TRANSLOCO...		Lus10029941 [exp]	8.4	0.9364
AT1G07700			Thioredoxin superfamily protei...		Lus10024726 [exp]	9.0	0.9378
AT5G39830		DEG8, DEGP8	DEG PROTEASE 8, Trypsin family...		Lus10007262 [exp]	9.2	0.9503
AT4G39710		PnsL4, FKBP16-2	Photosynthetic NDH subcomplex...		Lus10000197 [exp]	9.9	0.9326

Compare expression of checked genes

Lus10026864 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.