Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G59480 560 / 0 pfkB-like carbohydrate kinase family protein (.1) AT1G06030 552 / 0 pfkB-like carbohydrate kinase family protein (.1) AT1G06020 550 / 0 pfkB-like carbohydrate kinase family protein (.1) AT2G31390 548 / 0 STH pfkB-like carbohydrate kinase family protein (.1) AT4G10260 453 / 3e-161 pfkB-like carbohydrate kinase family protein (.1) AT1G66430 437 / 3e-154 pfkB-like carbohydrate kinase family protein (.1) AT5G51830 412 / 1e-144 pfkB-like carbohydrate kinase family protein (.1) AT1G50390 228 / 4e-75 pfkB-like carbohydrate kinase family protein (.1) AT3G54090 181 / 5e-53 FLN1 fructokinase-like 1 (.1) AT1G69200 154 / 5e-42 FLN2 fructokinase-like 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013611 [exp] 667 / 0 AT3G59480 559 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Lus10009526 [exp] 610 / 0 AT2G31390 553 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Lus10020346 [exp] 486 / 3e-175 AT3G59480 441 / 8e-158 pfkB-like carbohydrate kinase family protein (.1) Lus10040562 [exp] 430 / 3e-152 AT4G10260 539 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Lus10027401 [exp] 427 / 8e-151 AT5G51830 535 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Lus10009126 [exp] 419 / 5e-147 AT1G66430 582 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Lus10031668 [exp] 418 / 6e-147 AT5G51830 522 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Lus10028517 [exp] 412 / 4e-144 AT1G66430 575 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Lus10028089 [exp] 370 / 5e-129 AT4G10260 452 / 1e-161 pfkB-like carbohydrate kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G029000 [exp] 578 / 0 AT3G59480 568 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Potri.007G129700 [exp] 553 / 0 AT3G59480 559 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Potri.019G063600 [exp] 451 / 2e-160 AT4G10260 550 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Potri.004G089300 [exp] 449 / 1e-158 AT1G66430 527 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Potri.017G126300 [exp] 422 / 5e-148 AT1G66430 519 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Potri.012G132700 [exp] 414 / 1e-145 AT5G51830 460 / 1e-163 pfkB-like carbohydrate kinase family protein (.1) Potri.015G134900 [exp] 409 / 1e-143 AT5G51830 456 / 1e-161 pfkB-like carbohydrate kinase family protein (.1) Potri.008G097300 [exp] 166 / 1e-46 AT1G69200 598 / 0.0 fructokinase-like 2 (.1) Potri.016G109600 [exp] 164 / 2e-46 AT3G54090 630 / 0.0 fructokinase-like 1 (.1) Potri.011G114100 [exp] 79 / 3e-16 AT1G17160 474 / 8e-168 pfkB-like carbohydrate kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0118 [flax] [poplar] Ribokinase PF00294 [flax] [poplar] PfkB pfkB family carbohydrate kinase
Representative CDS sequence Show only first row Show all	>Lus10026865 pacid=23142938 polypeptide=Lus10026865 locus=Lus10026865.g ID=Lus10026865.BGIv1.0 annot-version=v1.0 ATGGCCTTCTCCAATGGCGGCTCAGGCTCCTCCTCTCTCATCGTCAGCTTCGGCGAGATGCTCATCGACTTCGTCCCCACCGTTTCCGGTGTCTCCCTCG CCGAGGCTCCCGGTTTCATCAAGGCTCCCGGCGGCGCCCCCGCCAACGTCGCCATCGCCGTCGCCAGACTCGGCGGGAAGGCCGCGTTCGTTGGGAAGCT CGGAGACGACGAGTTCGGCCGCATGCTGGCGGGGATCTTGAAGGAGAATGCCGTGATCGTAGACGGCATCAACTTCGACAAGGGAGCCAGGACCGCTCTT GCGTTTGTGACTTTGAAGGCTGATGGCGATCGCGAGTTCATGTTCTACCGGAATCCCAGCGCCGACATGCTCCTCCAGCCGGAGGAACTCAATCTTGAGC TCATTAGATCTGCGAAAGTTTTCCACTACGGATCAATAAGCTTGATAGTGGAGCCATGCAGATCAGCACACATGAAGGCAATGGAGGCTGCGAAAGATGC AGGCGCTCTTCTTTCTTATGACCCAAATCTGAGGCTCCCATTGTGGCCTTCACCAGAGGAGGCAAGGGAGCAGATACTTAGCATATGGGACAAGGCAGAG ATAATCAAGGTGAGCGACGTGGAGCTTGAATTCCTGACAGGAAGTGACAAGATTGATGATGCCTCCGCCATGTCACTCTGGCACGACAACTTGAAGCTGC TCTTGGTCACCCTTGGTGAAAAGGGTTGCAGATATTACACCAAGAGTTTCCATGGATCAGTGGATGCATTCCAAGTGAATACGGTGGATACAACAGGTGC TGGTGATTCTTTTGTGGGTGCTCTTCTTACCAAGATTGTGGATGACCAGTCCGTTCTTCAGGAGGAAGCAAGACTGAGGGAAGTGCTCAAGTTTGCAAAT GCGTGTGGGGCAATCACAACAACCAAAAAGGGTGCAATCCCAGCTCTTCCCACTGAAGCTGATTCTCTTGCACTCATCAAATCCTCTTCGCAGTAA
AA sequence Show only first row Show all	>Lus10026865 pacid=23142938 polypeptide=Lus10026865 locus=Lus10026865.g ID=Lus10026865.BGIv1.0 annot-version=v1.0 MAFSNGGSGSSSLIVSFGEMLIDFVPTVSGVSLAEAPGFIKAPGGAPANVAIAVARLGGKAAFVGKLGDDEFGRMLAGILKENAVIVDGINFDKGARTAL AFVTLKADGDREFMFYRNPSADMLLQPEELNLELIRSAKVFHYGSISLIVEPCRSAHMKAMEAAKDAGALLSYDPNLRLPLWPSPEEAREQILSIWDKAE IIKVSDVELEFLTGSDKIDDASAMSLWHDNLKLLLVTLGEKGCRYYTKSFHGSVDAFQVNTVDTTGAGDSFVGALLTKIVDDQSVLQEEARLREVLKFAN ACGAITTTKKGAIPALPTEADSLALIKSSSQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G59480			pfkB-like carbohydrate kinase ...		Lus10026865 [exp]	0	1
AT3G59480			pfkB-like carbohydrate kinase ...		Lus10013611 [exp]	1.0	0.9865
AT5G15900		TBL19	TRICHOME BIREFRINGENCE-LIKE 19...		Lus10024167 [exp]	3.5	0.9755
AT1G35830			VQ motif-containing protein (....		Lus10006941 [exp]	5.6	0.9548
AT1G68795		CLE12	CLAVATA3/ESR-RELATED 12 (.1)		Lus10034267 [exp]	5.7	0.9626
AT1G60810		ACLA-2	ATP-citrate lyase A-2 (.1)		Lus10030592 [exp]	6.3	0.9678
AT1G76250			unknown protein		Lus10016006 [exp]	6.9	0.9491
AT2G39518			Uncharacterised protein family...		Lus10040298 [exp]	7.3	0.9632
AT5G66120			3-dehydroquinate synthase, put...		Lus10041882 [exp]	7.9	0.9652
AT2G17940			Plant protein of unknown funct...		Lus10028461 [exp]	10.1	0.9706
AT1G68795		CLE12	CLAVATA3/ESR-RELATED 12 (.1)		Lus10041496 [exp]	11.2	0.9593

Compare expression of checked genes

Lus10026865 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.