Plant FIBer expression Database

Lus10026866 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G02900 80 / 1e-19 unknown protein
AT5G16660 77 / 1e-18 unknown protein
AT1G42960 50 / 2e-08 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10009524
[exp]
94 / 1e-24 AT3G02900 138 / 1e-41 unknown protein
Lus10012242
[exp]
46 / 9e-07 AT1G42960 163 / 8e-52 unknown protein
Lus10016034
[exp]
46 / 1e-06 AT1G42960 160 / 2e-50 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.013G078100
[exp]
101 / 4e-28 AT5G16660 134 / 1e-40 unknown protein
Potri.019G041700
[exp]
100 / 6e-28 AT5G16660 134 / 9e-41 unknown protein
Potri.007G064100
[exp]
52 / 6e-09 AT1G42960 147 / 1e-45 unknown protein
Potri.005G254200
[exp]
50 / 4e-08 AT1G42960 141 / 5e-43 unknown protein
PFAM info
Representative CDS sequence
>Lus10026866 pacid=23142807 polypeptide=Lus10026866 locus=Lus10026866.g ID=Lus10026866.BGIv1.0 annot-version=v1.0
ATGGCGACCTCCATTGCTCCCATTACGATCTCAGGTGTGGCTGTTAAGCTCTTAAAACACATTTCAACATTGCAGAGTGGTAACAAGGATGGAGGTGGCG
GTGGTGGTGAATTTGTTGCTGGTTTTATTGTAGGAGGGGCCCTGTTTGGAACCTTAGCTTATGTGTATGGCCCTAAGATAACAAAAGCCATTCTAAATGA
GGATGAACACGGGTTCCGCAAAGCCAGGAGACCGATTTACTCCGAGTACGATGATAGCAGCTTAGAACAGAAGACAAGGCAGACGTTGGACGCGAAAATC
AGCCAGCTGAACAGAGCCATTGACAAGGTGGCGTCGCGTCTGAGAGGTGGCAGCAATGACAGAACACCTCCGGTGCCTGTTGAAACTGATCCCGAAGTAG
AAGCCACCAAGTGA
AA sequence
>Lus10026866 pacid=23142807 polypeptide=Lus10026866 locus=Lus10026866.g ID=Lus10026866.BGIv1.0 annot-version=v1.0
MATSIAPITISGVAVKLLKHISTLQSGNKDGGGGGGEFVAGFIVGGALFGTLAYVYGPKITKAILNEDEHGFRKARRPIYSEYDDSSLEQKTRQTLDAKI
SQLNRAIDKVASRLRGGSNDRTPPVPVETDPEVEATK

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G16660 unknown protein Lus10026866
[exp]
0 1
AT3G06050 PRXIIF, ATPRXII... peroxiredoxin IIF (.1) Lus10041218
[exp]
5.5 0.8420
AT1G64355 unknown protein Lus10001903
[exp]
5.8 0.8872
AT2G32520 alpha/beta-Hydrolases superfam... Lus10035287
[exp]
6.0 0.8519
AT1G51400 Photosystem II 5 kD protein (.... Lus10009950
[exp]
6.7 0.9128
AT2G32720 B5 #4, B5#4, AT... ARABIDOPSIS CYTOCHROME B5 ISOF... Lus10010111
[exp]
7.5 0.8514
AT5G61820 unknown protein Lus10015933
[exp]
7.6 0.8422
AT3G47650 DnaJ/Hsp40 cysteine-rich domai... Lus10002020
[exp]
10.1 0.8826
AT1G72690 unknown protein Lus10008389
[exp]
10.9 0.8527
AT3G07880 SCN1 SUPERCENTIPEDE1, Immunoglobuli... Lus10006400
[exp]
12.3 0.8371
AT1G80500 SNARE-like superfamily protein... Lus10041670
[exp]
15.8 0.7547

Lus10026866 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.