Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27600 581 / 0 NARA5 GENES NECESSARY FOR THE ACHIEVEMENT OF RUBISCO ACCUMULATION 5, pfkB-like carbohydrate kinase family protein (.1) AT1G19600 81 / 3e-16 pfkB-like carbohydrate kinase family protein (.1) AT5G51830 50 / 2e-06 pfkB-like carbohydrate kinase family protein (.1) AT1G66430 50 / 2e-06 pfkB-like carbohydrate kinase family protein (.1) AT5G03300 47 / 1e-05 ADK2 adenosine kinase 2 (.1) AT5G58730 45 / 5e-05 pfkB-like carbohydrate kinase family protein (.1) AT4G10260 45 / 8e-05 pfkB-like carbohydrate kinase family protein (.1) AT3G09820 44 / 0.0002 ADK1, ATADK1 adenosine kinase 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013645 [exp] 800 / 0 AT4G27600 580 / 0.0 GENES NECESSARY FOR THE ACHIEVEMENT OF RUBISCO ACCUMULATION 5, pfkB-like carbohydrate kinase family protein (.1) Lus10007397 [exp] 76 / 2e-14 AT1G19600 518 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Lus10024268 [exp] 74 / 4e-14 AT1G19600 522 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Lus10031668 [exp] 48 / 9e-06 AT5G51830 522 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Lus10027401 [exp] 48 / 1e-05 AT5G51830 535 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Lus10009126 [exp] 46 / 5e-05 AT1G66430 582 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Lus10023197 [exp] 45 / 6e-05 AT5G03300 590 / 0.0 adenosine kinase 2 (.1) Lus10028517 [exp] 45 / 8e-05 AT1G66430 575 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Lus10040562 [exp] 44 / 0.0001 AT4G10260 539 / 0.0 pfkB-like carbohydrate kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G078600 [exp] 637 / 0 AT4G27600 588 / 0.0 GENES NECESSARY FOR THE ACHIEVEMENT OF RUBISCO ACCUMULATION 5, pfkB-like carbohydrate kinase family protein (.1) Potri.005G229100 [exp] 84 / 2e-17 AT1G19600 558 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Potri.002G034000 [exp] 77 / 3e-15 AT1G19600 556 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Potri.012G132700 [exp] 52 / 6e-07 AT5G51830 460 / 1e-163 pfkB-like carbohydrate kinase family protein (.1) Potri.004G089300 [exp] 52 / 6e-07 AT1G66430 527 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Potri.015G134900 [exp] 51 / 9e-07 AT5G51830 456 / 1e-161 pfkB-like carbohydrate kinase family protein (.1) Potri.010G224300 [exp] 48 / 9e-06 AT5G03300 620 / 0.0 adenosine kinase 2 (.1) Potri.019G063600 [exp] 47 / 2e-05 AT4G10260 550 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Potri.008G038100 [exp] 46 / 3e-05 AT5G03300 622 / 0.0 adenosine kinase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0118 [flax] [poplar] Ribokinase PF00294 [flax] [poplar] PfkB pfkB family carbohydrate kinase
Representative CDS sequence Show only first row Show all	>Lus10026867 pacid=23142891 polypeptide=Lus10026867 locus=Lus10026867.g ID=Lus10026867.BGIv1.0 annot-version=v1.0 ATGGGGAAAATTCTGTTGTCGTTGATATCCCCATCTTCTCCTCACGGCCTCACAATCCCATTCCCGCCCAGAAATCTCCTCCTCCTCAGCTCTTCTTTCT CTCCTTGTCTCTCTTTCTTATCCAATTCCCCTTCCGCTTCTCTACATGCCCCCGCCACTAGCTATCTTGTGCCTACCCGCGGCTTTAAATCTTACTCGAT GGGGAAATCCGTAGCTGGGTGTTCCCGAAGGAGGGCCGTCGGTTCTTTCTCCGACTTTTCCGGCGAATTAGATGGTGAGGATGATGACCCCCCACCTTCT GCCGATGATGATGAAGATGTTGACGAGGAATTCGGAGGGATAAGTCCAACTTCCGTCCTGCCTGACAAATGGGATGTTGTGGGTCTTGGTCAGGCCATGG TGGATTTCTCAGGCATTGTGGATGATGAGTTCTTGGAGAGATTGGGATTGGAGAAAGGAACGAGGAAGGTGGTGAACCATGAGGAGAGGGGTAGAGTTTT GCAGGCGATGGATGGGTGCAGTTACAAAGCAGCTGCTGGTGGATCTCTATCCAATACCCTAGTAGCTTTGGCCAGGCTTGGTTGTAAGCCAATTGGAGGC CCTCCTCTCAATGTTGCCATGGCAGGCAGCATAGGGAGTGATCCGTTGGGTGGCTTCTACAGGTCAAAATTGCGTAGGGCTAATGTGAATTTTCTTTCTC CACCTGTTAAAGATGGCACGACTGGAACTGTCATAGTTCTTACAACTCCAGATGCTCAACGAACTATGCTTGCATACCAGGGTACATCTTCTAAAGTAAA CTATGATCCGAGCTTGGCCAGCATTGTTTCGAAGACAAATATATTGGTAGTGGAAGGATATTTGTTTGAATTTCCGGACACCATCGAGACAATTAGAAAG GCATGTGAAGAAGCACGCAAGTGCGGTGCGGTAGTTGCAGTAACAGCTTCTGACGTATCTTGCATCGAGAGACACTATGATGACTTTTGGGAGATAGTAG GGAACTGTGCAGATGTCCTCTTTGCTAACAGTGACGAAGCAAGAGCACTATGCGATTTCGACTCGAACGAAAGCACTATCGCTGCCTCTAGATACCTCAG CCACTTTGTACCTCTGGTTTCAGTTACGGACGGACCAAGAGGATCGTACATGGGCTTAAAAGGAGAAGCAGTTTACGTCCCTCCTTCCGAATGTGTGCCT CTGGATACCTGCGGTGCTGGGGATGCATATGCTTCAGGCATCTTGTACGGCATCCTAAGAGGCGTATCGGATCTGAAAGGGATGGGTAGTTTAGCAGCTA GAGTTGCGGCCACAGTAGTGTCACAGCAAGGCACCAGGCTTAGAGTCCAGGATGCGGTTAAGCTAGCTGAGGAGTCTCTTCAATACCAATTCGAGTCGTC CAACGTCGCATCAGATATTGGTAGCGACCAAATCTCTTTGTAA
AA sequence Show only first row Show all	>Lus10026867 pacid=23142891 polypeptide=Lus10026867 locus=Lus10026867.g ID=Lus10026867.BGIv1.0 annot-version=v1.0 MGKILLSLISPSSPHGLTIPFPPRNLLLLSSSFSPCLSFLSNSPSASLHAPATSYLVPTRGFKSYSMGKSVAGCSRRRAVGSFSDFSGELDGEDDDPPPS ADDDEDVDEEFGGISPTSVLPDKWDVVGLGQAMVDFSGIVDDEFLERLGLEKGTRKVVNHEERGRVLQAMDGCSYKAAAGGSLSNTLVALARLGCKPIGG PPLNVAMAGSIGSDPLGGFYRSKLRRANVNFLSPPVKDGTTGTVIVLTTPDAQRTMLAYQGTSSKVNYDPSLASIVSKTNILVVEGYLFEFPDTIETIRK ACEEARKCGAVVAVTASDVSCIERHYDDFWEIVGNCADVLFANSDEARALCDFDSNESTIAASRYLSHFVPLVSVTDGPRGSYMGLKGEAVYVPPSECVP LDTCGAGDAYASGILYGILRGVSDLKGMGSLAARVAATVVSQQGTRLRVQDAVKLAEESLQYQFESSNVASDIGSDQISL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G27600		NARA5	GENES NECESSARY FOR THE ACHIE...		Lus10026867 [exp]	0	1
AT1G17220		FUG1	fu-gaeri1, Translation initiat...		Lus10013713 [exp]	1.4	0.9496
AT1G62750		ATSCO1, ATSCO1/...	SNOWY COTYLEDON 1, Translation...		Lus10028909 [exp]	1.7	0.9452
AT4G37380			Tetratricopeptide repeat (TPR)...		Lus10010385 [exp]	2.0	0.9496
AT3G01480		ATCYP38, CYP38	ARABIDOPSIS CYCLOPHILIN 38, cy...		Lus10032151 [exp]	4.5	0.9434
AT2G20890		PSB29, THF1	THYLAKOID FORMATION1, photosys...		Lus10018528 [exp]	4.6	0.9385
AT1G17220		FUG1	fu-gaeri1, Translation initiat...		Lus10005581 [exp]	6.3	0.9414
AT2G20890		PSB29, THF1	THYLAKOID FORMATION1, photosys...		Lus10039748 [exp]	6.9	0.9387
AT5G66055		EMB16, EMB2036,...	EMBRYO DEFECTIVE 2036, EMBRYO ...		Lus10028399 [exp]	8.1	0.9270
AT4G20360		AtRab8D, AtRABE...	RAB GTPase homolog E1B (.1)		Lus10043342 [exp]	8.5	0.9302
AT3G50685			unknown protein		Lus10026029 [exp]	10.7	0.9083

Compare expression of checked genes

Lus10026867 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.