Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60610 40 / 0.0007 F-box/RNI-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006513 [exp] 189 / 3e-58 AT5G02930 80 / 3e-16 F-box/RNI-like superfamily protein (.1) Lus10027244 [exp] 184 / 5e-56 AT5G02930 69 / 2e-12 F-box/RNI-like superfamily protein (.1) Lus10027245 [exp] 169 / 2e-51 ND / Lus10035564 [exp] 163 / 7e-49 AT3G58900 79 / 1e-16 F-box/RNI-like superfamily protein (.1.2.3.4) Lus10038967 [exp] 161 / 4e-46 AT3G18150 77 / 9e-15 RNI-like superfamily protein (.1) Lus10023776 [exp] 155 / 9e-46 AT3G51630 61 / 6e-10 with no lysine (K) kinase 5 (.1), with no lysine (K) kinase 5 (.2) Lus10038470 [exp] 147 / 5e-43 ND / Lus10038468 [exp] 147 / 5e-43 ND / Lus10027258 [exp] 140 / 3e-40 AT4G03220 74 / 9e-15 Protein with RNI-like/FBD-like domains (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G002100 [exp] 67 / 9e-13 AT4G03220 103 / 5e-24 Protein with RNI-like/FBD-like domains (.1) Potri.001G337200 [exp] 46 / 1e-05 AT5G22660 86 / 6e-19 FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10026868 pacid=23142854 polypeptide=Lus10026868 locus=Lus10026868.g ID=Lus10026868.BGIv1.0 annot-version=v1.0 ATGGAAGTCTGGGTACCGCAGTTGATGATATCGCGGTGGATTGATCTATTGGATAAGATAATCAAGTACGCTGCTTCTCATGGGGTTCGAGAGCTGTTCA TTCGTTCTCCCTATGGCACATGGGCTAGTGTTTCCGGATCAGTCTGCGCCTCTTATCAATCTCTGAAAGTTCTAGAGCTGAATCAATTAAACATCACGAA GACTGATGTTGAATTATGGTCTTGTTTGAAATTGCTGGAATCTCTTACTCTGGCCAACTGCCGCCTCCCCTTTGGCGATGGTGCTCATGATGCTCTTCCT AACTTCCCCAGATTGGAAACCCTAAAGCTGGACCGTTGCTTTTCTTTAAGAACTGAATTCAAGGCTCGTGTTTTGATAGTAACCGGACCCGAACTGCTCA ACTTTGAGATGGTTTCATCAGGATTCGACTATCTTGAAATTGATGCTCCCAAGCTCCAATCTTTCGGTCTTATGACTGATAGTCCCATTATAATGCTACT AGATGTGTCCAAGTCGAATCTTCCTTCACTTAGTCGTGCAAACATAGACTTAGTAGAGCACGTACATTCGGCGTTGGACACTTCTAGTGAAAGGGATTCA AAGAGGAAACAACATATCGAGAGGTGTGTGGACTTATTCAAGGTTCTCCATAATATAGAAGTACTGAATCTGCAGGTTGCGAACCTTGAGGTATGTGGTT GTTTGTTAAGTGCTTGA
AA sequence Show only first row Show all	>Lus10026868 pacid=23142854 polypeptide=Lus10026868 locus=Lus10026868.g ID=Lus10026868.BGIv1.0 annot-version=v1.0 MEVWVPQLMISRWIDLLDKIIKYAASHGVRELFIRSPYGTWASVSGSVCASYQSLKVLELNQLNITKTDVELWSCLKLLESLTLANCRLPFGDGAHDALP NFPRLETLKLDRCFSLRTEFKARVLIVTGPELLNFEMVSSGFDYLEIDAPKLQSFGLMTDSPIIMLLDVSKSNLPSLSRANIDLVEHVHSALDTSSERDS KRKQHIERCVDLFKVLHNIEVLNLQVANLEVCGCLLSA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10026868 [exp]	0	1
AT3G16180			Major facilitator superfamily ...		Lus10009506 [exp]	3.5	0.9548
AT5G03100			F-box/RNI-like superfamily pro...		Lus10029953 [exp]	4.5	0.9509
AT5G33340		CDR1	CONSTITUTIVE DISEASE RESISTANC...		Lus10039839 [exp]	4.7	0.9509
AT5G33340		CDR1	CONSTITUTIVE DISEASE RESISTANC...		Lus10003281 [exp]	4.9	0.9548
AT1G21880		LYM1	lysm domain GPI-anchored prote...		Lus10006200 [exp]	6.0	0.9548
AT1G47960		ATC/VIF1, C/VIF...	cell wall / vacuolar inhibitor...		Lus10023215 [exp]	6.9	0.9548
AT3G14040			Pectin lyase-like superfamily ...		Lus10023364 [exp]	7.7	0.9548
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Lus10027028 [exp]	8.5	0.9548
AT5G41040			HXXXD-type acyl-transferase fa...		Lus10026737 [exp]	8.8	0.7833
					Lus10033149 [exp]	9.2	0.9548

Compare expression of checked genes

Lus10026868 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.