Gene [FLAX] | FIBexDB

Lus10026870 [FLAX]

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Symbol

Arabidopsis homologues

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Locus ID	BLAST score/e-value	TF class	Alias	TAIR10 short description
AT5G28540	39 / 0.0006		BIP1	heat shock protein 70 (Hsp 70) family protein (.1)
AT5G42020	39 / 0.0006		BIP2, BIP	luminal binding protein, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2)

Paralogs

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Gene ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Lus10015477 [exp]	79 / 1e-17	AT1G28600	239 / 5e-74	GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2)
Lus10007778 [exp]	61 / 2e-11	AT5G42020	318 / 5e-104	luminal binding protein, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2)
Lus10022375 [exp]	61 / 3e-11	AT5G28540	767 / 0.0	heat shock protein 70 (Hsp 70) family protein (.1)
Lus10029103 [exp]	56 / 9e-10	AT5G28540	615 / 0.0	heat shock protein 70 (Hsp 70) family protein (.1)
Lus10020977 [exp]	55 / 2e-09	AT5G28540	779 / 0.0	heat shock protein 70 (Hsp 70) family protein (.1)
Lus10013882 [exp]	45 / 4e-06	AT5G28540	188 / 2e-55	heat shock protein 70 (Hsp 70) family protein (.1)
Lus10005498 [exp]	42 / 5e-05	AT5G11710	489 / 4e-166	ENTH/VHS family protein (.1)
Lus10032430 [exp]	41 / 0.0001	AT5G42020	1033 / 0.0	luminal binding protein, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2)
Lus10023043 [exp]	41 / 0.0001	AT1G64550	1249 / 0.0	susceptible to coronatine-deficient Pst DC3000 5, general control non-repressible 20, ATP-binding cassette F3, general control non-repressible 3 (.1)

Poplar homologues

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Locus ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Potri.013G018000 [exp]	44 / 2e-05	AT5G28540	991 / 0.0	heat shock protein 70 (Hsp 70) family protein (.1)
Potri.001G087500 [exp]	40 / 0.0002	AT5G42020	1184 / 0.0	luminal binding protein, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2)
Potri.003G143600 [exp]	40 / 0.0003	AT5G42020	1205 / 0.0	luminal binding protein, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2)
Potri.003G184000 [exp]	40 / 0.0004	AT3G12580	1040 / 0.0	ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1)

PFAM info

Clan ID	Clan name	Pfam ID	Pfam name	Pfam description
CL0108 [flax] [poplar]	Actin_ATPase	PF00012 [flax] [poplar]	HSP70	Hsp70 protein

Representative CDS sequence

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>Lus10026870 pacid=23142950 polypeptide=Lus10026870 locus=Lus10026870.g ID=Lus10026870.BGIv1.0 annot-version=v1.0

ATGGTGAGTTATACAGGAGAGAAGAGTGGGTTTGAGATTCTGATGAGGAAGAGAAAGAAAAAAGCATCTTGTTCGTTTGAGATTAGGCTTGGCAGGAGGC

TCGTGGGTTTCGGGTATCCGTTGGAGTCCGTCCGAATTGAGCCGATTTTTGCCCATCAATCGTGGGGTTTTGTCGGCTTCGGGCACACCCGTGACCCGCC

AAATTCGGGCGACGGGCGGTCATGGGGAGTTACGAGAATGGAGGAAACGTTTCAGATTGACGAGAATGGAATACTAACGGTGAGTGCAATGGAAAAGGGA

GCTTCTTCTGCAACATCTGCATCTTTAACCATCACCAGCTACAAAGGGAATCTAACCAAGACAGAGATAGAGAGGATGATGAAAAGGGCAAAAAATATGT

CTGTCGAAGAAGCACGAGGTAGCCAAAGCCCGTGTGGAAGCTAG

AA sequence

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>Lus10026870 pacid=23142950 polypeptide=Lus10026870 locus=Lus10026870.g ID=Lus10026870.BGIv1.0 annot-version=v1.0

MVSYTGEKSGFEILMRKRKKKASCSFEIRLGRRLVGFGYPLESVRIEPIFAHQSWGFVGFGHTRDPPNSGDGRSWGVTRMEETFQIDENGILTVSAMEKG

ASSATSASLTITSYKGNLTKTEIERMMKRAKNMSVEEARGSQSPCGS

DESeq2's median of ratios [FLAX]

Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G28540		BIP1	heat shock protein 70 (Hsp 70)...		Lus10026870 [exp]	0	1

Lus10026870 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.