Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G09720 644 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G55150 197 / 1e-55 DEA(D/H)-box RNA helicase family protein (.1) AT3G58570 194 / 4e-53 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G58510 192 / 9e-53 DEA(D/H)-box RNA helicase family protein (.1), DEA(D/H)-box RNA helicase family protein (.2), DEA(D/H)-box RNA helicase family protein (.3) AT3G01540 189 / 1e-51 ATDRH1, DRH1 ARABIDOPSIS THALIANA DEAD BOX RNA HELICASE 1, DEAD box RNA helicase 1 (.1.2.3.4) AT2G42520 189 / 2e-51 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G63120 188 / 2e-51 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT3G06480 187 / 9e-50 DEAD box RNA helicase family protein (.1) AT5G51280 182 / 3e-49 DEAD-box protein abstrakt, putative (.1) AT2G33730 183 / 5e-49 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013644 [exp] 952 / 0 AT3G09720 614 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10037646 [exp] 193 / 6e-54 AT1G55150 843 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10015627 [exp] 193 / 9e-54 AT1G55150 845 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10016207 [exp] 194 / 3e-53 AT2G42520 850 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10000849 [exp] 191 / 1e-52 AT2G42520 837 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10015976 [exp] 190 / 5e-52 AT2G42520 849 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10019484 [exp] 187 / 6e-51 AT5G63120 757 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10043334 [exp] 187 / 7e-51 AT5G63120 752 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10015977 [exp] 181 / 1e-49 AT2G42520 738 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G065300 [exp] 639 / 0 AT3G09720 652 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.015G083000 [exp] 199 / 4e-55 AT5G63120 707 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.003G038300 [exp] 193 / 5e-54 AT1G55150 790 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.012G084600 [exp] 194 / 2e-53 AT5G63120 704 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.003G217800 [exp] 194 / 3e-53 AT2G42520 812 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.001G007900 [exp] 193 / 4e-53 AT2G42520 807 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.006G196000 [exp] 191 / 3e-52 AT3G58570 790 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.012G045800 [exp] 187 / 3e-50 AT2G33730 994 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.002G194600 [exp] 187 / 5e-50 AT2G47330 1048 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.001G347100 [exp] 186 / 2e-49 AT5G14610 823 / 0.0 DEAD box RNA helicase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain CL0149 [flax] [poplar] CoA-acyltrans PF02458 [flax] [poplar] Transferase Transferase family CL0023 [flax] [poplar] P-loop_NTPase PF00270 [flax] [poplar] DEAD DEAD/DEAH box helicase
Representative CDS sequence Show only first row Show all	>Lus10026871 pacid=23142871 polypeptide=Lus10026871 locus=Lus10026871.g ID=Lus10026871.BGIv1.0 annot-version=v1.0 ATGAGATCGGTGGCGGATTTCATAGTGACAACGGGGCGGCGATGTAAATTCAGAAGGGTGAGGTCGTACGAGGTGTCCGACGTCACGCGAGCCGGGTTTG ATGAAGTGGACTTCAGGTGGGGGAAAGCCGCGTACGGTGGTCCGGTGAGGGGCAGCACTCACGATAGTAGCAAGCTTTTGAGTTTCGGAAGGGAAGGGGA GAAAGGGATAATTTTGCCGATCAGCTTGCCAGCGAAAGCGATGGAGAGATTTGACAAGGAGCTGGAGAGGATGGTGAACAAGAAAGGGACAAATACGGCC AAAAAAGCGACCCTCATTTCATCAGTGTCATTAAGCAAAGCCCTTCGCCGCCGGTCAAGTAAAACCCTTTCCGATATTCTTCAACAGGAAGGAAGACACG CTGAATCAAGTCTTACGGAGTTCAAGCCAATGGAGCAAGGCGCCACCTCTTTTCTTTTCGCTGGCACCAAATTTCGCAAGGATAAGTTCGCCGGTGTCTT TGCTCGCTTTCAGGGAAAGAAAGAAACCGAAAATGTTGATTCGGATTCAAGCTTGTTGCCGAGTGGGAATACTGAAGCTGAAGTTGAGCAAGTTAGGAGC CCTCCTAAGAAGCGGAAGCGAAAAAAATCGTCAGCCGGTGGTGTAGAGGGATTCAGTGTCTTCAAACCCTCAAAGGAGACGGAGACTACTGGTTCCGTTG AGCAGAACCGCGAGGATTCACACGAGGAGGCTTTGAGGGAGAAGAGGAAGGAATGGAATAAGCAGATTCAGCGGGATGCGTTATTCAGGAAGGGCCATGG CATCCATGTATCTGGAAATAACATCCCATCCCCACTTCAAAGTTTTGCCGAGTTAAGCTCCAGGTATGGATGTGATCCCTACTTGCTATGCAACTTGAAA GAATTTGGATATAAGGAACCAACCCCAATCCAGAGACAGACGATACCAGTTATTCTATCTGGCCGTGAATGCTTTGCTTGTGCTCCAACAGGATCTGGGA AGACTTTGGCATTTGTATGTCCCATCCTGATGAAGCTTAAGAACCCATCAAAGGATGGCATTAGAGCTCTTATATTGTGTCCAACAAGAGAGTTAGGCCT TCAAACTTCAAGAGAGTGCATGAAGATGGCTGGAGGAAATAAGTTTCGTATTAGGATATTGAAGAAAGAGCATCTGAAGAATCCTAATAAGTTTCTTTGT GATATTTTAATATCGACTCCTCTTCGGTTGAAGATTGCCATTAGCAAGAAAAAAGTTGACTTATCCGGGGTTGAGTTCCTTGTTCTCGATGAATCTGATA AACTGTTTGAGCCCGGCATGTTGAAGCAGACGGATTATGTGGTTAAAGCATGTTCTAATCCCTCGATAGTTCGGTCACTATTCAGTGCTACCTTGCCTGA TTATATTGAAGACCTCGCACGATCTGTGATGCATGATGCTGTTCGAATTGTCATTGGCATGAAGAACACCGCATCTGAAACTATAAAGCAGAAACTGATA TTTGCAGGAAGTGAGCAGGGGAAACTTATTGCACTTGGACAAAGCTTTGCGGAGAGTCTGAATCCACCAGTGTTGATCTTCCTTCAAAGCAAGGAACGTG CTAAAGAGCTATTTGAGGAACTAAAATATGAAGACATCAGAGTCGATGTTATCCACTCAGATTTGTCCGAGAAACAGCGAGAAACTTCGGTGGATGACTT TAGAGCAGGGAAAACATGGGTGTTGATAGCTACTGATGTGGTTGCCCGTGGTATGGATTTCAAAGGAGTGAACTGCGTGATCAATTACGATTTCCCTGAT TCGACTGCGGCATACATTCACAGGATTGGTCGGACAGGGAGGGCGGGGAGAACCGGGGAAGCTGTTACATTATACACAGAAGCAGATATTCCGCTTCTTC GGAACATAGGTAATGTTATGAAGCAGAAAAACCAAGAGAAGAAGGATAACGCTGTTTCAGGGCAGGAGTACGAGTTCCCGTCGTGGATATTGGATCTGCC TAAACGCAAGTGGAGGAAATACCGTCCTGGTAGAGACGCTATTTCAACTGGCCTAAAGGATTAA
AA sequence Show only first row Show all	>Lus10026871 pacid=23142871 polypeptide=Lus10026871 locus=Lus10026871.g ID=Lus10026871.BGIv1.0 annot-version=v1.0 MRSVADFIVTTGRRCKFRRVRSYEVSDVTRAGFDEVDFRWGKAAYGGPVRGSTHDSSKLLSFGREGEKGIILPISLPAKAMERFDKELERMVNKKGTNTA KKATLISSVSLSKALRRRSSKTLSDILQQEGRHAESSLTEFKPMEQGATSFLFAGTKFRKDKFAGVFARFQGKKETENVDSDSSLLPSGNTEAEVEQVRS PPKKRKRKKSSAGGVEGFSVFKPSKETETTGSVEQNREDSHEEALREKRKEWNKQIQRDALFRKGHGIHVSGNNIPSPLQSFAELSSRYGCDPYLLCNLK EFGYKEPTPIQRQTIPVILSGRECFACAPTGSGKTLAFVCPILMKLKNPSKDGIRALILCPTRELGLQTSRECMKMAGGNKFRIRILKKEHLKNPNKFLC DILISTPLRLKIAISKKKVDLSGVEFLVLDESDKLFEPGMLKQTDYVVKACSNPSIVRSLFSATLPDYIEDLARSVMHDAVRIVIGMKNTASETIKQKLI FAGSEQGKLIALGQSFAESLNPPVLIFLQSKERAKELFEELKYEDIRVDVIHSDLSEKQRETSVDDFRAGKTWVLIATDVVARGMDFKGVNCVINYDFPD STAAYIHRIGRTGRAGRTGEAVTLYTEADIPLLRNIGNVMKQKNQEKKDNAVSGQEYEFPSWILDLPKRKWRKYRPGRDAISTGLKD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G09720			P-loop containing nucleoside t...		Lus10026871 [exp]	0	1
AT5G58370			P-loop containing nucleoside t...		Lus10009919 [exp]	10.6	0.8187
AT2G45280		ATRAD51C	RAS associated with diabetes p...		Lus10030284 [exp]	11.1	0.7709
AT3G63240			DNAse I-like superfamily prote...		Lus10042619 [exp]	16.4	0.7735
AT3G16260		TRZ4	tRNAse Z4 (.1)		Lus10038290 [exp]	18.6	0.8113
AT2G28600			P-loop containing nucleoside t...		Lus10034162 [exp]	27.0	0.8156
AT1G76120			Pseudouridine synthase family ...		Lus10021231 [exp]	33.5	0.8036
AT1G10180			unknown protein		Lus10022896 [exp]	34.9	0.7821
AT3G18730		BRU1, MGO3, TSK	TONSOKU, MGOUN3, BRUSHY1, tetr...		Lus10037327 [exp]	46.1	0.8091
AT3G04820			Pseudouridine synthase family ...		Lus10009188 [exp]	61.3	0.8035
AT1G34360			translation initiation factor ...		Lus10032318 [exp]	62.3	0.7841

Compare expression of checked genes

Lus10026871 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.