Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17540 340 / 5e-115 HXXXD-type acyl-transferase family protein (.1) AT3G03480 303 / 6e-101 CHAT acetyl CoA:(Z)-3-hexen-1-ol acetyltransferase (.1) AT5G41040 188 / 2e-56 HXXXD-type acyl-transferase family protein (.1.2) AT3G48720 176 / 5e-52 DCF DEFICIENT IN CUTIN FERULATE, HXXXD-type acyl-transferase family protein (.1) AT5G63560 170 / 1e-49 HXXXD-type acyl-transferase family protein (.1) AT1G27620 142 / 6e-39 HXXXD-type acyl-transferase family protein (.1) AT3G62160 132 / 2e-35 HXXXD-type acyl-transferase family protein (.1) AT1G03390 130 / 2e-34 HXXXD-type acyl-transferase family protein (.1) AT5G57840 122 / 1e-31 HXXXD-type acyl-transferase family protein (.1) AT5G48930 121 / 3e-31 HCT hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020331 [exp] 451 / 8e-159 AT5G17540 504 / 4e-177 HXXXD-type acyl-transferase family protein (.1) Lus10020332 [exp] 410 / 3e-142 AT5G17540 464 / 3e-161 HXXXD-type acyl-transferase family protein (.1) Lus10020330 [exp] 382 / 9e-132 AT5G17540 436 / 2e-150 HXXXD-type acyl-transferase family protein (.1) Lus10005660 [exp] 380 / 9e-131 AT5G17540 461 / 4e-160 HXXXD-type acyl-transferase family protein (.1) Lus10005663 [exp] 365 / 1e-127 AT5G17540 295 / 4e-98 HXXXD-type acyl-transferase family protein (.1) Lus10005659 [exp] 365 / 6e-125 AT5G17540 406 / 6e-139 HXXXD-type acyl-transferase family protein (.1) Lus10005661 [exp] 352 / 1e-120 AT5G17540 412 / 7e-142 HXXXD-type acyl-transferase family protein (.1) Lus10001341 [exp] 270 / 8e-92 AT5G17540 205 / 5e-65 HXXXD-type acyl-transferase family protein (.1) Lus10001027 [exp] 254 / 1e-83 AT5G17540 210 / 1e-64 HXXXD-type acyl-transferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G043600 [exp] 421 / 5e-147 AT5G17540 545 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.013G074500 [exp] 418 / 6e-146 AT5G17540 547 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.013G074400 [exp] 400 / 5e-139 AT5G17540 518 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.013G074300 [exp] 390 / 4e-135 AT5G17540 497 / 7e-175 HXXXD-type acyl-transferase family protein (.1) Potri.019G002900 [exp] 369 / 9e-127 AT5G17540 481 / 5e-168 HXXXD-type acyl-transferase family protein (.1) Potri.019G003000 [exp] 363 / 2e-124 AT5G17540 480 / 9e-168 HXXXD-type acyl-transferase family protein (.1) Potri.003G019900 [exp] 357 / 6e-122 AT5G17540 410 / 3e-140 HXXXD-type acyl-transferase family protein (.1) Potri.001G448000 [exp] 348 / 5e-118 AT5G17540 400 / 4e-136 HXXXD-type acyl-transferase family protein (.1) Potri.001G447500 [exp] 326 / 1e-109 AT5G17540 380 / 2e-128 HXXXD-type acyl-transferase family protein (.1) Potri.001G447300 [exp] 325 / 3e-109 AT5G17540 382 / 2e-129 HXXXD-type acyl-transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [flax] [poplar] CoA-acyltrans PF02458 [flax] [poplar] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Lus10026872 pacid=23142958 polypeptide=Lus10026872 locus=Lus10026872.g ID=Lus10026872.BGIv1.0 annot-version=v1.0 ATGTTCAAGGTCCGAAGGCATGAGCCGGAGCTGGTCCGGCCGGCCAAACCGACTCCACACGAGTTGAAACCCCTCTCCGACATCGACGACCAGGAGGGAC TCCGATTCCACGTCCCGGTGATTCAGTTCTACAACTACCAACCTTCCATGAGCGGGAAGGACCCGGCGGCGGTGATCCGCGGAGCACTTGCGGATACGCT CGTGCCTTATTATCCCTTTGCTGGGCGGATGAGGGAAGGTCCTAACCGTAAGCTCGTAGTCGACTGTACCGGCGAAGGAGTTTTGTTCATCGAGGCTGAT GCGGATGCCAGGCTGGCGGATTTCGGTGAAGTGATTCACCCACCATTTCCATGCATTGAGGAACTACTGTACGATGTTCCAGGATCTAGCGCCATCCTCC ACGCCCCACTCCTCCTCATTCAGGTCACGCGCCTACAATGTGGTGGGTTTATTTTCGCTCTTCGTCTCCACCACTGTATGAGTGATGCCGTCGGCCTAGT TCAGTTCATGTCCGCACTGGGCGAGTTAGCTCGTGGTGCCACAACTCCCTCAGTCCTACCGGTTTGGGAAAGACACATTCTCAACGCTCGATCCCCACCC CGAGTGACATGCACGCACCGCGAGTACGGAAACGCCGACACAAAATTAAGCACAGTCATCATCCCCAACCCCGACAACGACCAAATGGAGCACCGCTCCT TCTTTTTCGGCCCCGCCGAAATATCTGCCCTCCGTAGCCACGCGCCTCCGCATCTCCGCAACTCCTACTCCCAAATCGAGCTCATCACCGCCTGCGCCTG GAAGTGTCGGACACTCGCCCTTAGATTTCACCCGGACGATGAAGTGTGCTTTATATGCATCGTCAACGTCCGATACAGGCCCGATTTCAAGCCGCTGTTA CCCAAGGCAGTATTAAGAGAGGGGTTTTAG
AA sequence Show only first row Show all	>Lus10026872 pacid=23142958 polypeptide=Lus10026872 locus=Lus10026872.g ID=Lus10026872.BGIv1.0 annot-version=v1.0 MFKVRRHEPELVRPAKPTPHELKPLSDIDDQEGLRFHVPVIQFYNYQPSMSGKDPAAVIRGALADTLVPYYPFAGRMREGPNRKLVVDCTGEGVLFIEAD ADARLADFGEVIHPPFPCIEELLYDVPGSSAILHAPLLLIQVTRLQCGGFIFALRLHHCMSDAVGLVQFMSALGELARGATTPSVLPVWERHILNARSPP RVTCTHREYGNADTKLSTVIIPNPDNDQMEHRSFFFGPAEISALRSHAPPHLRNSYSQIELITACAWKCRTLALRFHPDDEVCFICIVNVRYRPDFKPLL PKAVLREGF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G17540			HXXXD-type acyl-transferase fa...		Lus10026872 [exp]	0	1
AT5G17540			HXXXD-type acyl-transferase fa...		Lus10001341 [exp]	2.0	0.8820
AT4G30950		FADC, SFD4, FAD...	STEAROYL DESATURASE DEFICIENCY...		Lus10035831 [exp]	14.5	0.7731
AT4G01050		TROL	thylakoid rhodanese-like (.1)		Lus10005947 [exp]	23.0	0.8084
AT4G01050		TROL	thylakoid rhodanese-like (.1)		Lus10029448 [exp]	26.4	0.8049
AT1G52190			Major facilitator superfamily ...		Lus10038618 [exp]	27.0	0.7776
AT3G04760			Pentatricopeptide repeat (PPR-...		Lus10000554 [exp]	34.6	0.7985
AT1G21600		PTAC6	plastid transcriptionally acti...		Lus10018866 [exp]	37.7	0.7984
AT3G06430		AtPPR2, EMB2750	pentatricopeptide repeat 2, em...		Lus10028683 [exp]	39.0	0.7824
AT4G02510		TOC86, TOC160, ...	TRANSLOCON AT THE OUTER ENVELO...		Lus10006048 [exp]	41.6	0.7429
AT3G22150			Tetratricopeptide repeat (TPR)...		Lus10010473 [exp]	48.5	0.7811

Compare expression of checked genes

Lus10026872 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.