Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G56360 234 / 4e-68 PSL4 PRIORITY IN SWEET LIFE 4, calmodulin-binding protein (.1) AT2G42390 137 / 4e-37 protein kinase C substrate, heavy chain-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010326 [exp] 253 / 3e-75 AT5G56360 604 / 0.0 PRIORITY IN SWEET LIFE 4, calmodulin-binding protein (.1) Lus10013398 [exp] 247 / 1e-72 AT5G56360 611 / 0.0 PRIORITY IN SWEET LIFE 4, calmodulin-binding protein (.1) Lus10002183 [exp] 140 / 4e-38 AT2G42390 206 / 2e-67 protein kinase C substrate, heavy chain-related (.1) Lus10039901 [exp] 78 / 5e-15 AT1G06260 346 / 4e-117 Cysteine proteinases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G060332 [exp] 244 / 8e-77 AT5G56360 227 / 8e-71 PRIORITY IN SWEET LIFE 4, calmodulin-binding protein (.1) Potri.003G223000 [exp] 255 / 8e-76 AT5G56360 587 / 0.0 PRIORITY IN SWEET LIFE 4, calmodulin-binding protein (.1) Potri.001G001700 [exp] 251 / 2e-74 AT5G56360 539 / 0.0 PRIORITY IN SWEET LIFE 4, calmodulin-binding protein (.1) Potri.013G060266 [exp] 232 / 4e-72 AT5G56360 218 / 3e-67 PRIORITY IN SWEET LIFE 4, calmodulin-binding protein (.1) Potri.019G092100 [exp] 140 / 5e-38 AT2G42390 204 / 6e-67 protein kinase C substrate, heavy chain-related (.1) Potri.013G124000 [exp] 133 / 1e-35 AT2G42390 215 / 3e-71 protein kinase C substrate, heavy chain-related (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10026874 pacid=23142875 polypeptide=Lus10026874 locus=Lus10026874.g ID=Lus10026874.BGIv1.0 annot-version=v1.0 ATGGTTCTGGTCACCCGTAGCTCTCACATTATGATCAGTGTTACGAGGAAGATGATGAAAGTCGCTTTCTTGCTTTCAGTTACCGTTTCTTCTTTGATTT CTTCTTCTTCTTCTTCTTCTTCCGTTTCATTCCTCGGAATTGCCCCTCAAGATGAGGATTACTTCAGAAAAGAGACCATCAAGTGCAGGAACGGATCCAG CAAGTTCACTATCTCTCAGCTCAATGATGATTACTGCGACTGCCCTGACGGCACTGACGAGCCAGGAACTTCAGCATGCCCAGATGGAAAGTTCTATTGT CAGAATATGGGACATCTTCCCATCTCATTACACTCCTCCAGGGTCAATGATGCCATTTGTGATTGCTGTGACGGGAGTGATGAGTATGGTGGCAAAGTGA AGTGCGGAAACACATGCTGGAAGGAAGGTAAAGAGGCCAGGGATAAGTTAGTGAAACTGATCGATATGTATCGAGAAGGTGTCAGCATACGTCAAAGAGT AGTTGAACTAGCAAAAGACGCAATCTCCAAGGACAGATCAGAACTATCTAAGCTAAAAAGTGAAGAAAAATCCCTTAACAAACTAGTCAAGCACCTAAAA GTACGGAAGGACCAATTCGAGAAGGCTGAGAAAGAAAAAGAACTAGAGAAAGAGAAAGAAGATAAGACCAAGGCAGATGTCCTGGATGACGGCAAGTGGG GTGATGCATCTGATGGTAACAGTAAGTCAGGTTCAGTGACTTCTGAGGATGAGATGATTGGTCTTGTGGAACAGGACAACAGAAGTAACCATGATGGCCT GTCAAAAGAAGAGGTTGGCCGCCTGGTTGCTTCACGTTGGACTGGTGAAAAACCTGATCAAGTTGAGGAAAGTGTCACCGGTGATAGTAAAAAGAACGTA AATGAGAAGCATCAATCATCCACAGATGACAATCTTGATGTTTCCAGTGTAGTGCATGAGCCTGGCTTGGATGAGCAAGCAAAGTTCTTAGATATCTTCG CTTCTCCTGGGATAACTACTCGGATTCAATTATGGTTGGAGAAGATGCAGAGATTCACCCGAAGCATTTTAGGAATTGTTAATTGGTTTTCTAGCCCAGT TGATAGTTTAGATGCAAGTCGAATTCGAAAGAAGTACAATGAGTCTACCACGAGGTTGTCCGATATACAGGGGAGGATATCAAGCTTGACAGAGAAGTTA AAATATGATTTTGGTCCCGATGACGAATTCTATGAATTTTATGATCAATGCTTTGAGTCTAAGCCGGACAAGTATGTCTATAAAGTTTGCCCCTTCAGAG ATGCTGTCCAGGAGGAGCGAGAGAATCACAAAACGCAACTAGGATACTGGGAGAAATTTGAAGACAATTACAGTACCATGTTATTTTCAAATGGTGCTGG TTGCTGGAATGGACCTCGTAGAAGTATGAAGGTGAAGCTGAGGTGTGGACTGAAAACAGAAGTGAGTGAGGTGGATGAACCTAGCCGCTGCGAATATGCT GCTGTCATGTCAACCCCTATTAGATGTCTAGATGGAAAGCTGAAGGTAATCTTCCTTCCACGCCAGTTAGCTATGTTCTTACTTCATTGTTCTTTACCTT TGTTGAAGTTCGTTGATCCAAATCCTCCATGTGTTAACCGAACCCGTGAGGGTTTTTTTTTTTGCCGCGAGGGATATTCCGAACTAAATTGTGAATCCCT TTCGAGTTTGTACTCTCTGATCATAGTGGTCAGTGGAGCTTTCTTCGCCAATGTGCACCCTTACTTTTTCTCCGGCAACGGTTTTCCACCTAAGTCCTTC GTGTCATCTCTTTTTCGATCCATCTTTATATTCGTTTATTGCCTGCCGATTCCTAACAACCTTGATGAAAATGGTTCCAACACGACAGGAACTCCAAGAT ACTCTACAAATTCTGCACAAAGACGTCCCTCAAACCCATGA
AA sequence Show only first row Show all	>Lus10026874 pacid=23142875 polypeptide=Lus10026874 locus=Lus10026874.g ID=Lus10026874.BGIv1.0 annot-version=v1.0 MVLVTRSSHIMISVTRKMMKVAFLLSVTVSSLISSSSSSSSVSFLGIAPQDEDYFRKETIKCRNGSSKFTISQLNDDYCDCPDGTDEPGTSACPDGKFYC QNMGHLPISLHSSRVNDAICDCCDGSDEYGGKVKCGNTCWKEGKEARDKLVKLIDMYREGVSIRQRVVELAKDAISKDRSELSKLKSEEKSLNKLVKHLK VRKDQFEKAEKEKELEKEKEDKTKADVLDDGKWGDASDGNSKSGSVTSEDEMIGLVEQDNRSNHDGLSKEEVGRLVASRWTGEKPDQVEESVTGDSKKNV NEKHQSSTDDNLDVSSVVHEPGLDEQAKFLDIFASPGITTRIQLWLEKMQRFTRSILGIVNWFSSPVDSLDASRIRKKYNESTTRLSDIQGRISSLTEKL KYDFGPDDEFYEFYDQCFESKPDKYVYKVCPFRDAVQEERENHKTQLGYWEKFEDNYSTMLFSNGAGCWNGPRRSMKVKLRCGLKTEVSEVDEPSRCEYA AVMSTPIRCLDGKLKVIFLPRQLAMFLLHCSLPLLKFVDPNPPCVNRTREGFFFCREGYSELNCESLSSLYSLIIVVSGAFFANVHPYFFSGNGFPPKSF VSSLFRSIFIFVYCLPIPNNLDENGSNTTGTPRYSTNSAQRRPSNP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G56360		PSL4	PRIORITY IN SWEET LIFE 4, calm...		Lus10026874 [exp]	0	1
AT2G43980		ATITPK4	"inositol 1,3,4-trisphosphate ...		Lus10033768 [exp]	2.0	0.8150
AT3G53320			unknown protein		Lus10023170 [exp]	17.4	0.8072
AT1G67325			Ran BP2/NZF zinc finger-like s...		Lus10011357 [exp]	18.9	0.7100
AT5G43130		TAF4, TAF4B	TBP-associated factor 4B, TBP-...		Lus10033265 [exp]	22.5	0.7837
AT1G76950		PRAF1	Regulator of chromosome conden...		Lus10028600 [exp]	27.1	0.7869
AT4G39860			unknown protein		Lus10041695 [exp]	32.4	0.7767
AT3G53760		ATGCP4	GAMMA-TUBULIN COMPLEX PROTEIN ...		Lus10042807 [exp]	34.2	0.7803
AT1G15750		TPL, WSIP1	WUS-INTERACTING PROTEIN 1, TOP...		Lus10006650 [exp]	35.3	0.7529
AT2G36660		PAB7	poly(A) binding protein 7 (.1)		Lus10023885 [exp]	35.5	0.7032
AT3G23340		CKL10	casein kinase I-like 10 (.1)		Lus10042570 [exp]	38.2	0.7442

Compare expression of checked genes

Lus10026874 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.