Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G56350 704 / 0 Pyruvate kinase family protein (.1) AT4G26390 692 / 0 Pyruvate kinase family protein (.1) AT5G08570 680 / 0 Pyruvate kinase family protein (.1) AT5G63680 673 / 0 Pyruvate kinase family protein (.1) AT3G04050 666 / 0 Pyruvate kinase family protein (.1) AT3G55650 652 / 0 Pyruvate kinase family protein (.1) AT3G25960 638 / 0 Pyruvate kinase family protein (.1) AT3G55810 600 / 0 Pyruvate kinase family protein (.1) AT3G52990 328 / 1e-106 Pyruvate kinase family protein (.1.2) AT2G36580 322 / 2e-104 Pyruvate kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003439 [exp] 968 / 0 AT5G56350 759 / 0.0 Pyruvate kinase family protein (.1) Lus10010329 [exp] 718 / 0 AT5G56350 930 / 0.0 Pyruvate kinase family protein (.1) Lus10013396 [exp] 710 / 0 AT5G56350 931 / 0.0 Pyruvate kinase family protein (.1) Lus10041003 [exp] 693 / 0 AT5G08570 928 / 0.0 Pyruvate kinase family protein (.1) Lus10017364 [exp] 665 / 0 AT5G08570 907 / 0.0 Pyruvate kinase family protein (.1) Lus10010159 [exp] 655 / 0 AT5G08570 896 / 0.0 Pyruvate kinase family protein (.1) Lus10013449 [exp] 372 / 7e-127 AT5G08570 543 / 0.0 Pyruvate kinase family protein (.1) Lus10008644 [exp] 326 / 1e-105 AT3G52990 967 / 0.0 Pyruvate kinase family protein (.1.2) Lus10035581 [exp] 324 / 4e-105 AT3G52990 941 / 0.0 Pyruvate kinase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G060400 [exp] 727 / 0 AT5G56350 835 / 0.0 Pyruvate kinase family protein (.1) Potri.001G001600 [exp] 726 / 0 AT5G56350 913 / 0.0 Pyruvate kinase family protein (.1) Potri.003G223100 [exp] 722 / 0 AT5G56350 915 / 0.0 Pyruvate kinase family protein (.1) Potri.019G032600 [exp] 715 / 0 AT5G56350 816 / 0.0 Pyruvate kinase family protein (.1) Potri.010G254900 [exp] 677 / 0 AT5G08570 927 / 0.0 Pyruvate kinase family protein (.1) Potri.008G002500 [exp] 673 / 0 AT5G08570 933 / 0.0 Pyruvate kinase family protein (.1) Potri.010G233200 [exp] 335 / 2e-109 AT3G52990 901 / 0.0 Pyruvate kinase family protein (.1.2) Potri.008G027100 [exp] 328 / 1e-106 AT3G52990 901 / 0.0 Pyruvate kinase family protein (.1.2) Potri.006G117400 [exp] 323 / 1e-104 AT3G52990 988 / 0.0 Pyruvate kinase family protein (.1.2) Potri.003G088700 [exp] 256 / 1e-78 AT1G32440 836 / 0.0 plastidial pyruvate kinase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0151 [flax] [poplar] PK_TIM PF00224 [flax] [poplar] PK Pyruvate kinase, barrel domain CL0151 [flax] [poplar] PF02887 [flax] [poplar] PK_C Pyruvate kinase, alpha/beta domain
Representative CDS sequence Show only first row Show all	>Lus10026875 pacid=23142817 polypeptide=Lus10026875 locus=Lus10026875.g ID=Lus10026875.BGIv1.0 annot-version=v1.0 ATGGAGAACTCAATGACGAGACTACTAGCCACGTCCTCAATGTCCGCCGAGGCTCAGATGAAGCGCAAGACGAAGATCATCTGCACTCTGGGCCCTCAGT CTCGCTCCGTCGAGATGATAGAGACGCTCCTCCATGCAGGTATGAACGTCGCTCGCTTCAACTTCTCCCACGGCACTCACGATTACCACCAGCAAACCCT CGACAACCTCCGCGCCGCCATGGCCAACACTTCCATCCCTTGCGCCGTCATGCTCGACACTAAGGGTCCGGAAATTCGGACGGGATTCCTGAAGGACGGG AAGCCGATTGAACTGAAGCAAGGAAACGAGATTGTTATCTCGACCGACTACAATCTGAAAGGCGACGAGAGTACAATCTCGATGAGCTATAAGAAGATTG CGGAGGATGTGAATCCAGGCAGCAGGATTTTGTGCTCGGACGGTACGATTTCCTTCAGAGTCCTGTCCTGCGACAAGGAACAAGGACTCGTCCGTTGCCT GTGCGAGAATTCCGCTACCTTGGGCGAGAAGAAGAACGTCAATCTCCCCGGAGTCATTGTCGATCTCCCGACCTTGACCGGGAAGGACAAGGACGACATT CTGAATTGGGGGATTCCGAACAAAATCGATGTCATCGCTCTTTCCTTTGTTCGGAAGGGATCCGATCTGACCGAGGTTAGGAACCTGATTGGCGAGAAGA ATTCGAAAAACATTATGCTGATGTCGAAGGTCGAGAATCAGGAAGGAATCATCAACATCGAAGAGATTATTGCGAATTCAGACGCTCTGATGGTCGCTAG AGGAGACTTGGGGATGGAGATTCCGGTTGAAAAGATGTTCCTCGCTCAGAAGACGATGATCCGGAAGGCGAACATTCAAGGGAAGCCAGTTGTGACTGCT ACTCAGATGCTCGAATCGATGATCAAGTCGCCCAGGCCGACTCGTGCTGAGGCGACCGATGTTGCTAATGCAGTTCTTGACGGAACTGATTGCGTGATGC TTAGCGGGGAGACTGCTGCTGGAGCTTATCCTGAGCTGGCGGTTCGGACCATGGCAAGGATATGCATCGAGGCGGAGAGTTCAATCGATTACGGAGATTG TTTCAAGAGGACGATGAAGAGTGTTCCTTTGCCGTTGAGCCCGCTGGAGAGCTTGGCTGCTTCTGCTGTGAGGACTGCTAAGCATATCAATGCTGCTTTG ATTCTGGTGCTGACCAAAGGTGGGAGCACTGCTAGGCTGCTGTCCAAGTACAGGCCGCACGTTCCAATTCTGTCTGTGGTCGTGCCGGAAATCGGTACTG ATGCTTCGTTCGAGTGGACTTGTAGCGATGAGTCTCCAGCTAGGCATGGCCTTGTCAGCTGGGGTGTCATCCCGGTTTTGAGCTCGTCTCATGTGACCGA ATCCGATCAGGAATCGTCGGAAGTTATTATCTCGAAGGGGCTCGAGGATGCGACCAGGAATGGGCTCTGCAGGGTGGGAGACTCGGTTGTGGCGCTTCAT AAGATTGGGACTGCAGCAGTGATCAAGATTGTTCAAGTTCAGTAG
AA sequence Show only first row Show all	>Lus10026875 pacid=23142817 polypeptide=Lus10026875 locus=Lus10026875.g ID=Lus10026875.BGIv1.0 annot-version=v1.0 MENSMTRLLATSSMSAEAQMKRKTKIICTLGPQSRSVEMIETLLHAGMNVARFNFSHGTHDYHQQTLDNLRAAMANTSIPCAVMLDTKGPEIRTGFLKDG KPIELKQGNEIVISTDYNLKGDESTISMSYKKIAEDVNPGSRILCSDGTISFRVLSCDKEQGLVRCLCENSATLGEKKNVNLPGVIVDLPTLTGKDKDDI LNWGIPNKIDVIALSFVRKGSDLTEVRNLIGEKNSKNIMLMSKVENQEGIINIEEIIANSDALMVARGDLGMEIPVEKMFLAQKTMIRKANIQGKPVVTA TQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGETAAGAYPELAVRTMARICIEAESSIDYGDCFKRTMKSVPLPLSPLESLAASAVRTAKHINAAL ILVLTKGGSTARLLSKYRPHVPILSVVVPEIGTDASFEWTCSDESPARHGLVSWGVIPVLSSSHVTESDQESSEVIISKGLEDATRNGLCRVGDSVVALH KIGTAAVIKIVQVQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G56350			Pyruvate kinase family protein...		Lus10026875 [exp]	0	1
AT4G14480			Protein kinase superfamily pro...		Lus10041162 [exp]	13.7	0.9121
AT3G19615			unknown protein		Lus10031599 [exp]	22.4	0.9116
AT1G79460		ATKS1, ATKS, GA...	GA REQUIRING 2, ARABIDOPSIS TH...		Lus10014673 [exp]	32.4	0.9059
AT3G07310			Protein of unknown function (D...		Lus10002342 [exp]	32.4	0.9059
AT2G03800		GEK1	GEKO1, D-aminoacyl-tRNA deacyl...		Lus10036828 [exp]	32.9	0.8970
AT1G22400		ATUGT85A1, UGT8...	ARABIDOPSIS THALIANA UDP-GLUCO...		Lus10013922 [exp]	37.4	0.8880
AT3G50390			Transducin/WD40 repeat-like su...		Lus10016779 [exp]	37.9	0.9035
					Lus10004280 [exp]	39.2	0.9027
AT1G22380		ATUGT85A3	UDP-glucosyl transferase 85A3 ...		Lus10013921 [exp]	42.1	0.8876
AT5G56350			Pyruvate kinase family protein...		Lus10003439 [exp]	50.8	0.8956

Compare expression of checked genes

Lus10026875 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.