Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G29120 495 / 2e-164 ATGLR2.7 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) AT2G29110 487 / 2e-161 ATGLR2.8 glutamate receptor 2.8 (.1) AT2G29100 458 / 3e-150 ATGLR2.9 GLUTAMATE RECEPTOR 2.9, glutamate receptor 2.9 (.1) AT2G24720 444 / 3e-145 ATGLR2.2 glutamate receptor 2.2 (.1) AT2G24710 428 / 4e-139 ATGLR2.3 glutamate receptor 2.3 (.1) AT5G27100 424 / 1e-137 ATGLR2.1 ARABIDOPSIS THALIANA GLUTAMATE RECEPTOR 2.1, glutamate receptor 2.1 (.1) AT5G11210 404 / 1e-130 ATGLR2.5 ARABIDOPSIS THALIANA GLU, glutamate receptor 2.5 (.1) AT4G31710 346 / 5e-108 ATGLR2.4 ARABIDOPSIS THALIANA GLUTAMATE RECEPTOR 2.4, glutamate receptor 2.4 (.1) AT1G42540 330 / 2e-101 ATGLR3.3 glutamate receptor 3.3 (.1) AT4G35290 315 / 2e-96 ATGLUR2, ATGLR3.2, GLUR2 GLUTAMATE RECEPTOR 3.2, glutamate receptor 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003436 [exp] 905 / 0 AT2G29120 867 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Lus10026913 [exp] 767 / 0 AT2G29120 790 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Lus10026235 [exp] 687 / 0 AT2G29120 912 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Lus10020109 [exp] 686 / 0 AT2G29120 822 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Lus10035980 [exp] 311 / 2e-94 AT3G51480 1149 / 0.0 glutamate receptor 3.6 (.1) Lus10026553 [exp] 308 / 1e-93 AT4G35290 1035 / 0.0 GLUTAMATE RECEPTOR 3.2, glutamate receptor 2 (.1.2) Lus10027171 [exp] 306 / 1e-92 AT1G05200 1243 / 0.0 glutamate receptor 3.4 (.1.2) Lus10012245 [exp] 302 / 4e-91 AT1G42540 1258 / 0.0 glutamate receptor 3.3 (.1) Lus10016031 [exp] 297 / 2e-89 AT1G42540 1123 / 0.0 glutamate receptor 3.3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G012900 [exp] 594 / 0 AT2G29120 910 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Potri.018G012100 [exp] 593 / 0 AT2G29120 934 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Potri.018G012600 [exp] 584 / 0 AT2G29120 946 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Potri.018G013200 [exp] 576 / 0 AT2G29120 882 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Potri.006G270400 [exp] 556 / 0 AT2G29110 874 / 0.0 glutamate receptor 2.8 (.1) Potri.006G268200 [exp] 553 / 0 AT2G29120 841 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Potri.006G268400 [exp] 552 / 0 AT2G29110 835 / 0.0 glutamate receptor 2.8 (.1) Potri.018G013000 [exp] 549 / 0 AT2G29120 908 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Potri.006G268700 [exp] 546 / 0 AT2G29120 855 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Potri.006G268500 [exp] 546 / 0 AT2G29110 622 / 0.0 glutamate receptor 2.8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0144 [flax] [poplar] Periplas_BP PF01094 [flax] [poplar] ANF_receptor Receptor family ligand binding region CL0030 [flax] [poplar] Ion_channel PF00060 [flax] [poplar] Lig_chan Ligand-gated ion channel CL0177 [flax] [poplar] PBP PF00497 [flax] [poplar] SBP_bac_3 Bacterial extracellular solute-binding proteins, family 3
Representative CDS sequence Show only first row Show all	>Lus10026876 pacid=23142843 polypeptide=Lus10026876 locus=Lus10026876.g ID=Lus10026876.BGIv1.0 annot-version=v1.0 ATGTACCAAGAGCATCCGGAACTCAACAGTTACGGATTGTGGGCATATGATGCTACAACAGCACTAGCCATGGCAGTTGAGAATATTAATACAGAATCTG GTCCAACACTGGCTCGTGAGCTATCACAAACAAGATTCAAAGGACTGAGTGGAGATTTTGTTTTTGAAAAAGGGCAGTTGAGAGCTTCGACTTATGAGAT GGTGAATGTGATTGGTAATGGAGTAAGACGGATTGGGCTTTGGCCTTCTAAACATGGGCTCGGAAAGAAGAATGGGCCAATGATCATATGGCCAAGGGAA ACAACTTGGGCTCCTAAAGGGTTTGAGATCCCGACAAATGGGAAGAAGTTGAGGATAGGAGTGCCTGTGAAGCATGAATTCTTTGAGTTGGTTAATGTCA ACAACAGTAGTGGCATTATTACTGGATACTGCATCGACATCTTTGAAGCTGTTGTCAAGGCACTGCCGTATGCACTTCCCATAGAGTATGTTCCATTTGC TAAACCTAATGGCGAAAGTGCCGGGACTTACAATGACCTGGTTCACAACGTCTTTTTAGGGAAGTTTGACGGTGCGGTGGGAGATATAACCATACGAGCT AAGAGGTCGGTTTACGTTGACTTTACATTTCCGTACTCAGAATCAGGAGTGGCAATGTTGGTGGCAGTGCAGGAAAATGGAAGCAAGACTGCATGGGTGT TCCTCAAGCCATTGGCGTGGGATCTTTGGGTGACCACATTTTTGTTCTTCGTTTTCATCGGGTTTGTGATCTGGGTTTTGGAGCACAGGATCAATAACGA TTTCAGAGGACCTCCATCTCATCAAGCTGGAACTAGCTTCTGGTTTTCCTTCTCCACCGTGGTTTTCGCGCACAGAGAGAAGGTAGTGAGCAACTTGACA AGGACAGTGATGATCATTTGGTGCTTCGTGGTTCTCATATTGACTCAGAGCTACTCTGCAAATTTAGCTAGTCTCCTCACAGTCCAGCAGCTCAAGCCTG TTATTGCGGACATAAATCAACTCTTAAGGAAAGGAGAATCTGTGGGATTCCAGAGAGGCTCATCTCTGATGGGACTCTTATTACGATTGGGTTTCAAAAA TCGCAATCTCGTACCTTATAATAGTTTAGATGAGTGTCACTCACTTTTCTCTCAAAGAAGAATGGTAGCTGCAGTTGACGAAGTCACCTACATGAAGCTC TTCCTAGCAAAGCATTGCTCCAACTACACAATGATCGACCTACCTTACAAAACGGACGGCTTCGGATTCGTGTTCCCCAAAGGCTCTCCACTAGCTGCTG ATATTTCCAGAGCAATTCTGGACCTAAATGAGGGAGGTGAAATTTCAAGAATCGAAGAAAAATGGTTTGGTACAAAGGGTATAAGATGCCCCGATCACCA CTCGACTGCATCAGATTCTTCTGACAGCGAGAAGCTTGGGTTAGATAGCTTCTGGAGCCTGGTTCTGATAGCTGGAGTTGCTTCACTTTCAGCACTCTTC ATTTTTTCATCCATGTTCGTTTACGAGCACAGGAATGTTCTGCTCGATGATTCGAGCCATTCCTTATGGGGAAGGATCATGAATTTGCTCAAGGCTTTCG ACAACAAAGATCTCGAATGCCATACTTTTAGGACAGAGAGAGTTGGTGATCTGGTCAATCTCGCCGATTCGAATAATGTGCAGCACTACTCCTTGAAGGA GCCGGATGTGGATCATGATTCAGTACCTAGGGTGCCGCTTACTCCTGCTCCTCTAGAGATACACAATAACATCACAGCTGAAGAAGAAGATACAAATGTG GCAAGTGATTCACATCCAAATTGTGATCCAGGAGCCGTTCATAAAGCATTGACTAAGGCAAATGTTACGTTGGTCCCCAATATTCCCATAGATGTATGA
AA sequence Show only first row Show all	>Lus10026876 pacid=23142843 polypeptide=Lus10026876 locus=Lus10026876.g ID=Lus10026876.BGIv1.0 annot-version=v1.0 MYQEHPELNSYGLWAYDATTALAMAVENINTESGPTLARELSQTRFKGLSGDFVFEKGQLRASTYEMVNVIGNGVRRIGLWPSKHGLGKKNGPMIIWPRE TTWAPKGFEIPTNGKKLRIGVPVKHEFFELVNVNNSSGIITGYCIDIFEAVVKALPYALPIEYVPFAKPNGESAGTYNDLVHNVFLGKFDGAVGDITIRA KRSVYVDFTFPYSESGVAMLVAVQENGSKTAWVFLKPLAWDLWVTTFLFFVFIGFVIWVLEHRINNDFRGPPSHQAGTSFWFSFSTVVFAHREKVVSNLT RTVMIIWCFVVLILTQSYSANLASLLTVQQLKPVIADINQLLRKGESVGFQRGSSLMGLLLRLGFKNRNLVPYNSLDECHSLFSQRRMVAAVDEVTYMKL FLAKHCSNYTMIDLPYKTDGFGFVFPKGSPLAADISRAILDLNEGGEISRIEEKWFGTKGIRCPDHHSTASDSSDSEKLGLDSFWSLVLIAGVASLSALF IFSSMFVYEHRNVLLDDSSHSLWGRIMNLLKAFDNKDLECHTFRTERVGDLVNLADSNNVQHYSLKEPDVDHDSVPRVPLTPAPLEIHNNITAEEEDTNV ASDSHPNCDPGAVHKALTKANVTLVPNIPIDV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G29120		ATGLR2.7	GLUTAMATE RECEPTOR 2.7, gluta...		Lus10026876 [exp]	0	1
AT3G57910			D111/G-patch domain-containing...		Lus10021033 [exp]	1.7	0.8806
AT2G28085			SAUR-like auxin-responsive pro...		Lus10021436 [exp]	5.7	0.8523
AT5G14490	NAC	ANAC085	NAC domain containing protein ...		Lus10003668 [exp]	6.9	0.8410
AT3G45140		ATLOX2, LOX2	ARABIODOPSIS THALIANA LIPOXYGE...		Lus10012570 [exp]	7.1	0.8345
AT2G27930			PLATZ transcription factor fam...		Lus10036044 [exp]	10.8	0.8373
AT1G69530		ATHEXPALPHA1.2,...	EXPANSIN 1, expansin A1 (.1.2....		Lus10026614 [exp]	12.7	0.7700
AT4G25480	AP2_ERF	CBF3, DREB1A, A...	C-REPEAT BINDING FACTOR 3, de...		Lus10024491 [exp]	13.6	0.8223
					Lus10028567 [exp]	14.0	0.8256
AT1G72100			late embryogenesis abundant do...		Lus10000723 [exp]	15.1	0.8312
AT4G25470	AP2_ERF	DREB1C, FTQ4, C...	FREEZING TOLERANCE QTL 4, DRE/...		Lus10017828 [exp]	16.5	0.8068

Compare expression of checked genes

Lus10026876 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.