Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G24720 121 / 4e-32 ATGLR2.2 glutamate receptor 2.2 (.1) AT2G29100 117 / 1e-30 ATGLR2.9 GLUTAMATE RECEPTOR 2.9, glutamate receptor 2.9 (.1) AT2G29120 114 / 6e-30 ATGLR2.7 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) AT4G31710 108 / 1e-27 ATGLR2.4 ARABIDOPSIS THALIANA GLUTAMATE RECEPTOR 2.4, glutamate receptor 2.4 (.1) AT2G29110 104 / 3e-26 ATGLR2.8 glutamate receptor 2.8 (.1) AT5G27100 103 / 5e-26 ATGLR2.1 ARABIDOPSIS THALIANA GLUTAMATE RECEPTOR 2.1, glutamate receptor 2.1 (.1) AT2G24710 102 / 1e-25 ATGLR2.3 glutamate receptor 2.3 (.1) AT5G11180 99 / 2e-24 ATGLR2.6 ARABIDOPSIS THALIANA GLUTAMATE RECEPTOR 2.6, glutamate receptor 2.6 (.1) AT5G11210 71 / 2e-14 ATGLR2.5 ARABIDOPSIS THALIANA GLU, glutamate receptor 2.5 (.1) AT3G07520 69 / 9e-14 ATGLR1.4 glutamate receptor 1.4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003436 [exp] 252 / 8e-79 AT2G29120 867 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Lus10020109 [exp] 224 / 1e-68 AT2G29120 822 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Lus10026235 [exp] 164 / 5e-47 AT2G29120 912 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Lus10026914 [exp] 140 / 1e-43 AT2G29100 65 / 1e-13 GLUTAMATE RECEPTOR 2.9, glutamate receptor 2.9 (.1) Lus10026913 [exp] 92 / 1e-21 AT2G29120 790 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Lus10016031 [exp] 56 / 2e-09 AT1G42540 1123 / 0.0 glutamate receptor 3.3 (.1) Lus10039672 [exp] 54 / 2e-08 AT2G32400 969 / 0.0 GLUTAMATE RECEPTOR 3.7, glutamate receptor 5 (.1) Lus10027170 [exp] 53 / 2e-08 AT2G32400 970 / 0.0 GLUTAMATE RECEPTOR 3.7, glutamate receptor 5 (.1) Lus10012245 [exp] 52 / 6e-08 AT1G42540 1258 / 0.0 glutamate receptor 3.3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G012100 [exp] 134 / 7e-37 AT2G29120 934 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Potri.006G268450 [exp] 127 / 1e-36 AT5G27100 243 / 8e-75 ARABIDOPSIS THALIANA GLUTAMATE RECEPTOR 2.1, glutamate receptor 2.1 (.1) Potri.018G011800 [exp] 133 / 2e-36 AT2G29110 805 / 0.0 glutamate receptor 2.8 (.1) Potri.018G013200 [exp] 133 / 2e-36 AT2G29120 882 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Potri.018G012000 [exp] 132 / 4e-36 AT2G29110 821 / 0.0 glutamate receptor 2.8 (.1) Potri.018G012300 [exp] 130 / 2e-35 AT2G24720 822 / 0.0 glutamate receptor 2.2 (.1) Potri.006G268200 [exp] 128 / 2e-34 AT2G29120 841 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Potri.006G268700 [exp] 127 / 2e-34 AT2G29120 855 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Potri.006G268900 [exp] 125 / 8e-34 AT2G29110 882 / 0.0 glutamate receptor 2.8 (.1) Potri.018G012600 [exp] 125 / 8e-34 AT2G29120 946 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0144 [flax] [poplar] Periplas_BP PF01094 [flax] [poplar] ANF_receptor Receptor family ligand binding region
Representative CDS sequence Show only first row Show all	>Lus10026877 pacid=23142900 polypeptide=Lus10026877 locus=Lus10026877.g ID=Lus10026877.BGIv1.0 annot-version=v1.0 ATGGAAAGTACTAACATTTTACTTTTGTTCAGCATGATGAGCTTGTTCGCTGCAGTTCATTCCTTTACGAAACATAATATTCGCGAGGCGCCGACGGCGG GGCAGAGTAACGCGACGGTTGCAGTGAAGATCGGAGTGATTCTTGACTTGAACGGCAGCGACGACAACCTCGTTGGCCGAGTTGGGCTTAGCTGTATTCA AATGGCAGTTTCCGATTTCTACGCAGCTCGTCCAAACTACACCACCCGCCTCGACATCCACGCCAGGGATTCTCCCGGAGACGACGTCGTTCAGGCTGCT TCGTCAGTGGAAGCAATATTGGGCCCCGAAACGTCAATGCAAGCCCATTTCATCGTAGCTCTTGGAGAAAAGGTTCACGTTCCAATCATCTCATTCTCGG CATCAAGCCCCACCGTCGATTCTTCCAACCAAGACCCTTACTTCTTCCGCGCTAATCCAACGGACTCCACTCAAGCACATGTCATAAGCGGCATAGTGAA AGCTCATGACAATGCAAACTAG
AA sequence Show only first row Show all	>Lus10026877 pacid=23142900 polypeptide=Lus10026877 locus=Lus10026877.g ID=Lus10026877.BGIv1.0 annot-version=v1.0 MESTNILLLFSMMSLFAAVHSFTKHNIREAPTAGQSNATVAVKIGVILDLNGSDDNLVGRVGLSCIQMAVSDFYAARPNYTTRLDIHARDSPGDDVVQAA SSVEAILGPETSMQAHFIVALGEKVHVPIISFSASSPTVDSSNQDPYFFRANPTDSTQAHVISGIVKAHDNAN

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G29110		ATGLR2.8	glutamate receptor 2.8 (.1)		Lus10026877 [exp]	0	1
AT4G29280		LCR22	low-molecular-weight cysteine-...		Lus10015983 [exp]	1.4	1.0000
AT4G16295		SPH1	S-protein homologue 1 (.1)		Lus10029390 [exp]	2.4	1.0000
AT5G33340		CDR1	CONSTITUTIVE DISEASE RESISTANC...		Lus10029913 [exp]	3.0	1.0000
AT5G18460			Protein of Unknown Function (D...		Lus10006860 [exp]	3.2	1.0000
					Lus10009372 [exp]	3.5	1.0000
					Lus10000400 [exp]	3.5	1.0000
AT3G45600		TET3	tetraspanin3 (.1)		Lus10023218 [exp]	5.3	0.9926
AT5G19580			glyoxal oxidase-related protei...		Lus10043230 [exp]	6.0	0.9620
AT5G63810		BGAL10	beta-galactosidase 10 (.1)		Lus10023977 [exp]	6.3	0.9889
AT2G27930			PLATZ transcription factor fam...		Lus10036044 [exp]	7.1	0.9397

Compare expression of checked genes

Lus10026877 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.