Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G18270 320 / 2e-108 NAC ANAC087 Arabidopsis NAC domain containing protein 87 (.1.2) AT3G04060 316 / 1e-106 NAC ANAC046 NAC domain containing protein 46 (.1) AT5G07680 278 / 5e-92 NAC ANAC079, ATNAC4, ANAC080 Arabidopsis NAC domain containing protein 79, NAC domain containing protein 80 (.1.2) AT5G61430 278 / 1e-91 NAC ANAC100, ATNAC5 NAC domain containing protein 100 (.1) AT5G39610 260 / 2e-85 NAC ORE1, AtNAC2, ANAC092, ATNAC6 ORESARA 1, NAC domain containing protein 2, Arabidopsis NAC domain containing protein 92, NAC domain containing protein 6 (.1) AT3G29035 254 / 8e-83 NAC ORS1, AtNAC3, ANAC059 ORE1 SISTER1, Arabidopsis NAC domain containing protein 59, NAC domain containing protein 3 (.1) AT5G53950 253 / 2e-81 NAC ATCUC2, CUC2, ANAC098 CUP-SHAPED COTYLEDON 2, Arabidopsis NAC domain containing protein 98, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) AT3G18400 245 / 2e-79 NAC ANAC058 NAC domain containing protein 58 (.1) AT3G15170 235 / 2e-75 NAC ATNAC1, CUC1, ANAC054 CUP-SHAPED COTYLEDON1, Arabidopsis NAC domain containing protein 54, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) AT2G24430 233 / 2e-74 NAC ANAC039, ANAC038 Arabidopsis NAC domain containing protein 39, NAC domain containing protein 38 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003435 [exp] 595 / 0 AT5G18270 315 / 2e-106 Arabidopsis NAC domain containing protein 87 (.1.2) Lus10001648 [exp] 265 / 1e-86 AT5G61430 359 / 4e-124 NAC domain containing protein 100 (.1) Lus10021659 [exp] 265 / 2e-86 AT5G61430 361 / 8e-125 NAC domain containing protein 100 (.1) Lus10005537 [exp] 254 / 6e-83 AT5G53950 317 / 3e-107 CUP-SHAPED COTYLEDON 2, Arabidopsis NAC domain containing protein 98, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Lus10020165 [exp] 247 / 8e-79 AT2G24430 306 / 2e-102 Arabidopsis NAC domain containing protein 39, NAC domain containing protein 38 (.1.2) Lus10026966 [exp] 243 / 1e-77 AT2G24430 311 / 6e-105 Arabidopsis NAC domain containing protein 39, NAC domain containing protein 38 (.1.2) Lus10009669 [exp] 238 / 4e-76 AT3G18400 308 / 3e-104 NAC domain containing protein 58 (.1) Lus10009029 [exp] 237 / 1e-75 AT3G18400 311 / 3e-105 NAC domain containing protein 58 (.1) Lus10041924 [exp] 231 / 2e-75 AT5G53950 281 / 9e-95 CUP-SHAPED COTYLEDON 2, Arabidopsis NAC domain containing protein 98, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G054200 [exp] 347 / 3e-118 AT5G18270 339 / 4e-115 Arabidopsis NAC domain containing protein 87 (.1.2) Potri.019G031600 [exp] 345 / 3e-117 AT5G18270 328 / 6e-111 Arabidopsis NAC domain containing protein 87 (.1.2) Potri.012G001400 [exp] 281 / 7e-93 AT5G61430 448 / 1e-158 NAC domain containing protein 100 (.1) Potri.015G020000 [exp] 270 / 3e-88 AT5G61430 446 / 1e-157 NAC domain containing protein 100 (.1) Potri.017G086200 [exp] 261 / 6e-85 AT5G61430 386 / 2e-134 NAC domain containing protein 100 (.1) Potri.011G115400 [exp] 249 / 2e-80 AT5G53950 312 / 1e-104 CUP-SHAPED COTYLEDON 2, Arabidopsis NAC domain containing protein 98, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Potri.001G396300 [exp] 247 / 6e-80 AT5G53950 299 / 5e-100 CUP-SHAPED COTYLEDON 2, Arabidopsis NAC domain containing protein 98, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Potri.012G056300 [exp] 241 / 6e-78 AT3G18400 317 / 6e-108 NAC domain containing protein 58 (.1) Potri.015G046800 [exp] 242 / 7e-78 AT3G18400 326 / 1e-111 NAC domain containing protein 58 (.1) Potri.006G277000 [exp] 238 / 7e-76 AT2G24430 340 / 1e-116 Arabidopsis NAC domain containing protein 39, NAC domain containing protein 38 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02365 [flax] [poplar] NAM No apical meristem (NAM) protein
Representative CDS sequence Show only first row Show all	>Lus10026879 pacid=23142918 polypeptide=Lus10026879 locus=Lus10026879.g ID=Lus10026879.BGIv1.0 annot-version=v1.0 ATGGAGGAGCCAGCCGTGTTGAACAGAGGCCACCAAGTGCTCGACTTGCCTCCTGGATTCCGATTCCATCCCTCCGACGAAGAGATCATCACTCATTACC TTACCGAGAAGGTCAAGGACTCCAACTTCACAGCTATCGCCGTCGGAGAAGCCGATCTCAACAAGTCCGAGCCCTGGGACCTACCATGCAAAGCGAAGAT GGGGGAGAAGGAGTGGTACTTCTTCTGTCAGAGGGACAAGAAGTATCCGACGGGGATGAGGACGAACCGAGCGACGGTGGCCGGGTACTGGAAGGCGACG GGGAAAGATAAGGAGATATTCAGAGGGAGAGGATGCCTCGTCGGGATGAAGAAGACTCTGGTTTTCTACAGAGGTAGAGCTCCCAAAGGTGAAAAAACTA ACTGGGTTATGCACGAGTTTCGCCTGGAGGGAAATTTCTCTTACTACTCCTTCCCCAAAGCTTCCAAGGATGAATGGGTTGTGTGTAGAGTGTTTCACAA GAGCCCGGCGTCATCATCGGGAGGAGGAGTGATGATGAAGAGACCTTCTCCGGTGGAAGAGCTGATGAGGCCGTCGTCTAGTGCTTTCGGCGACGATTTC TTCGACTGCTCCTTATCTCTCCCGCCGTTGATGGATCTGCCTTACGCCGATAGCGTACTCAACGACTTCGCCAAACAGTTGCCTAATTCCAATAATTACA GTAATACCTTCACCAACCACCACCACCTTATTTCTTCTTCCAATTCACCTTATATCGGCGGCGGCGGCGGCGGAAGAGGTGGTGTTCAGTTGTACACGTT TCCAAATTCTGCGGCGGCGGGGTACTTGCACCGAGGAGGATATGGGCATGAGTGCAAGCTGGAGCAGCAGCAGTCAATGGTCAGCCTATCGCAAGACACG GGGTTGAGCACGGACAATATGAACGCGGCGCCGGAAATCAGTTCCAAGCAATTGGGAATGGGAATTAGCGGCGGCGGCGGAGGAGGAGGAGAGGACCCGT CGACGTCGGCGGGTGGGTCCACGTCAGGAATGGTTGAATTGGACTCTTTCTGGGACAATTACTGA
AA sequence Show only first row Show all	>Lus10026879 pacid=23142918 polypeptide=Lus10026879 locus=Lus10026879.g ID=Lus10026879.BGIv1.0 annot-version=v1.0 MEEPAVLNRGHQVLDLPPGFRFHPSDEEIITHYLTEKVKDSNFTAIAVGEADLNKSEPWDLPCKAKMGEKEWYFFCQRDKKYPTGMRTNRATVAGYWKAT GKDKEIFRGRGCLVGMKKTLVFYRGRAPKGEKTNWVMHEFRLEGNFSYYSFPKASKDEWVVCRVFHKSPASSSGGGVMMKRPSPVEELMRPSSSAFGDDF FDCSLSLPPLMDLPYADSVLNDFAKQLPNSNNYSNTFTNHHHLISSSNSPYIGGGGGGRGGVQLYTFPNSAAAGYLHRGGYGHECKLEQQQSMVSLSQDT GLSTDNMNAAPEISSKQLGMGISGGGGGGGEDPSTSAGGSTSGMVELDSFWDNY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G18270	NAC	ANAC087	Arabidopsis NAC domain contain...		Lus10026879 [exp]	0	1
AT5G57580			Calmodulin-binding protein (.1...		Lus10001436 [exp]	2.0	0.9377
AT5G03380			Heavy metal transport/detoxifi...		Lus10023924 [exp]	2.0	0.9516
AT5G24870			RING/U-box superfamily protein...		Lus10026941 [exp]	2.8	0.9493
AT4G31450			RING/U-box superfamily protein...		Lus10020145 [exp]	8.7	0.9372
AT5G38200			Class I glutamine amidotransfe...		Lus10028493 [exp]	8.7	0.9400
AT5G46180		DELTA-OAT	ornithine-delta-aminotransfera...		Lus10038510 [exp]	9.2	0.9320
AT2G32210			unknown protein		Lus10003815 [exp]	14.4	0.9252
AT2G38640			Protein of unknown function (D...		Lus10010681 [exp]	15.1	0.9133
AT5G09640		SNG2, SCPL19	SINAPOYLGLUCOSE ACCUMULATOR 2,...		Lus10007731 [exp]	17.1	0.9355
AT1G64940		CYP89A6	"cytochrome P450, family 87, s...		Lus10020360 [exp]	19.2	0.9242

Compare expression of checked genes

Lus10026879 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.