Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G51100 321 / 1e-109 FSD2 Fe superoxide dismutase 2 (.1) AT4G25100 269 / 1e-90 ATFSD1, FSD1 ARABIDOPSIS FE SUPEROXIDE DISMUTASE 1, Fe superoxide dismutase 1 (.1.2.3.4.5) AT5G23310 211 / 3e-67 FSD3 Fe superoxide dismutase 3 (.1) AT3G10920 97 / 2e-23 MSD1, MEE33, ATMSD1 MATERNAL EFFECT EMBRYO ARREST 33, ARABIDOPSIS MANGANESE SUPEROXIDE DISMUTASE 1, manganese superoxide dismutase 1 (.1.2) AT3G56350 82 / 4e-18 Iron/manganese superoxide dismutase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010174 [exp] 209 / 1e-65 AT5G23310 359 / 1e-125 Fe superoxide dismutase 3 (.1) Lus10017378 [exp] 207 / 6e-65 AT5G23310 368 / 5e-129 Fe superoxide dismutase 3 (.1) Lus10034222 [exp] 99 / 6e-24 AT3G10920 370 / 2e-131 MATERNAL EFFECT EMBRYO ARREST 33, ARABIDOPSIS MANGANESE SUPEROXIDE DISMUTASE 1, manganese superoxide dismutase 1 (.1.2) Lus10012883 [exp] 96 / 5e-22 AT3G10920 356 / 1e-123 MATERNAL EFFECT EMBRYO ARREST 33, ARABIDOPSIS MANGANESE SUPEROXIDE DISMUTASE 1, manganese superoxide dismutase 1 (.1.2) Lus10003430 [exp] 67 / 2e-12 AT5G51100 60 / 6e-10 Fe superoxide dismutase 2 (.1) Lus10030534 [exp] 48 / 2e-06 AT3G10920 241 / 8e-81 MATERNAL EFFECT EMBRYO ARREST 33, ARABIDOPSIS MANGANESE SUPEROXIDE DISMUTASE 1, manganese superoxide dismutase 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G110400 [exp] 373 / 4e-130 AT5G51100 335 / 3e-115 Fe superoxide dismutase 2 (.1) Potri.012G112301 [exp] 212 / 1e-68 AT5G51100 221 / 2e-72 Fe superoxide dismutase 2 (.1) Potri.005G089600 [exp] 175 / 5e-53 AT5G23310 340 / 1e-118 Fe superoxide dismutase 3 (.1) Potri.013G092600 [exp] 93 / 5e-22 AT3G10920 370 / 6e-132 MATERNAL EFFECT EMBRYO ARREST 33, ARABIDOPSIS MANGANESE SUPEROXIDE DISMUTASE 1, manganese superoxide dismutase 1 (.1.2) Potri.019G057300 [exp] 92 / 1e-21 AT3G10920 360 / 6e-128 MATERNAL EFFECT EMBRYO ARREST 33, ARABIDOPSIS MANGANESE SUPEROXIDE DISMUTASE 1, manganese superoxide dismutase 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02777 [flax] [poplar] Sod_Fe_C Iron/manganese superoxide dismutases, C-terminal domain PF00081 [flax] [poplar] Sod_Fe_N Iron/manganese superoxide dismutases, alpha-hairpin domain
Representative CDS sequence Show only first row Show all	>Lus10026881 pacid=23142962 polypeptide=Lus10026881 locus=Lus10026881.g ID=Lus10026881.BGIv1.0 annot-version=v1.0 ATGGCTGCTCATGCTGCTGCTGCATTTCCACTTCTGAAATGTCCTCTCCTGCCAGGCATAGGACTGAATGTTGCAGCTCCTGGATTGCAATGGCGACACA AGGTTCGCTTTGCCATTTTGGCTATCAGGCGGTCAAGAATAATGACTGGTCTAGTCACAATAACTGCAAAATTCGAACTCAAGCCCCCTCCATACTCCAT GGATGCTTTGGAGCCACACATGAGCAAGGACACCTTTGAGTATCACTGGGGAAAGCATCATAGGGCTTATGTGGACAACTTGAACAAGCAAATTGATGGA ACAGAGCTAGAAGACATGTCGCTGGAGGATGTGGTTGTCGCTACCTACAACAAAGAGGATAAGCTACCAGCTTTCAATAATGCTGCGCAAGCTTTGAACC ATGAATTCTTCTGGGAATCGATGAAACCTGGCGGTGGAGGAAAACCATCAGGAGAGCTTCTGATGTTAATTGAAAGGGACTTCACTTCTTTTGATAGGTT TGTGGAAGAGTTCAAGTCAGCTGCATCGACCCAGTTTGGTTCCGGGTGGGCTTGGCTTGTATACAAAGCGAATAGGCTTGACGTTGGGAACGCAGTAAAT CCTCGTCCATCCGAGGAGGACAAGAAACTTGTGATTGTGAAGAGTCCGAATGCTGTCAATCCCCTCGTTTGGGATTATGATGTAGGCGCTTTCAACTTCT GTATCCCTCTTCTGACAATTGACATTTGGGAGCACGCATACTACCTTGATTTCCAGAATCGACGGCCTGAATACATATCAACCTTTATGGAAAAGCTGGT GTCGTGGGAAGCAGTGAGCGCGAGGCTTGTAGCTGCAAAAGCTCGAGCATCTCAGAGAGAAGAAGAAGAAGAGAGGAAGAAGAGGGAGGAAAAGGAGGAT ATCTTAGGTACCAGGGAACCCGTGGAGATGTCTGCGGATAGTAGTGATGAAAAAGAATAA
AA sequence Show only first row Show all	>Lus10026881 pacid=23142962 polypeptide=Lus10026881 locus=Lus10026881.g ID=Lus10026881.BGIv1.0 annot-version=v1.0 MAAHAAAAFPLLKCPLLPGIGLNVAAPGLQWRHKVRFAILAIRRSRIMTGLVTITAKFELKPPPYSMDALEPHMSKDTFEYHWGKHHRAYVDNLNKQIDG TELEDMSLEDVVVATYNKEDKLPAFNNAAQALNHEFFWESMKPGGGGKPSGELLMLIERDFTSFDRFVEEFKSAASTQFGSGWAWLVYKANRLDVGNAVN PRPSEEDKKLVIVKSPNAVNPLVWDYDVGAFNFCIPLLTIDIWEHAYYLDFQNRRPEYISTFMEKLVSWEAVSARLVAAKARASQREEEEERKKREEKED ILGTREPVEMSADSSDEKE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G51100		FSD2	Fe superoxide dismutase 2 (.1)		Lus10026881 [exp]	0	1
AT1G47720		OSB1	Organellar Single-stranded, Pr...		Lus10024852 [exp]	1.7	0.9146
AT1G09795		HISN1B, ATATP-P...	ATP phosphoribosyl transferase...		Lus10028993 [exp]	4.6	0.8828
AT1G48460			unknown protein		Lus10032738 [exp]	8.2	0.9159
AT3G14110		FLU	FLUORESCENT IN BLUE LIGHT, Tet...		Lus10015677 [exp]	8.9	0.9177
AT5G28750			Bacterial sec-independent tran...		Lus10015910 [exp]	12.4	0.8750
AT1G10522			unknown protein		Lus10030655 [exp]	14.3	0.8964
AT5G66470			RNA binding;GTP binding (.1)		Lus10014289 [exp]	21.2	0.9071
AT3G62030		CYP20-3, ROC4	cyclophilin 20-3, rotamase CYP...		Lus10038015 [exp]	22.8	0.8831
AT1G78630		EMB1473	embryo defective 1473, Ribosom...		Lus10041940 [exp]	24.5	0.9067
AT2G32180		PTAC18	plastid transcriptionally acti...		Lus10030017 [exp]	25.5	0.8916

Compare expression of checked genes

Lus10026881 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.