Plant FIBer expression Database

Lus10026882 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G25080 218 / 4e-72 Sas10/Utp3/C1D family (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10003434
[exp]
108 / 7e-30 AT5G25080 61 / 8e-12 Sas10/Utp3/C1D family (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G264700
[exp]
259 / 2e-88 AT5G25080 225 / 9e-75 Sas10/Utp3/C1D family (.1)
Potri.018G018100
[exp]
248 / 5e-84 AT5G25080 223 / 6e-74 Sas10/Utp3/C1D family (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF04000 Sas10_Utp3 Sas10/Utp3/C1D family
Representative CDS sequence
>Lus10026882 pacid=23142853 polypeptide=Lus10026882 locus=Lus10026882.g ID=Lus10026882.BGIv1.0 annot-version=v1.0
ATGGGGGATACCGACCTAAGTACGATTATCCCAGAATCAGCGCTGAACTCTGTGAACACTACCTTGACCAACTTAGAACAAGTGGAGGTGAACTTGCGTC
AATTCCTATCCCTTGCTGATCCAGATGTTATTTCTGAGATGCCTCCTCTGGAGAGAGCTCAATCTCTGCTAATGGTCGCTAAGGCCACAACCATTCTCTT
TGCATTGAGATTGAGGTGCAATGGAGTTCATCCAGATGACCATCCGGTCAAGGCAGAGCTGGAGAGAATCAACTTGTATGAAAAGAAGCTGGAGCGGCTC
ATGGATTTGAGTAAAGCTCCATTACGACGATCGACCACCTTGAATTACCAGGCTGCGACCCGGGTTATCGAACATTCCTTGCCTGATCTTACTCCAGAAC
AACGGAGAAATATGAAGGATATCAGTAGAGGAGAAAGGCACCGGATGAGCTCTACGGAAACGAGCATGCCAAAGAGGAGAAAGTTTCCTGATAAATCCTC
GGTGCAAGCTGCCGCCAAAGAGTTTCTGGAGAAGGCTGCCCGTGAGATCGTTGGAGTGCAAGCAGGTGGTTTCAAAGGACCAATACAAGTCGACAGTGAC
ACAACAGATGAGGATGAGGCACCTAAGGCCTAA
AA sequence
>Lus10026882 pacid=23142853 polypeptide=Lus10026882 locus=Lus10026882.g ID=Lus10026882.BGIv1.0 annot-version=v1.0
MGDTDLSTIIPESALNSVNTTLTNLEQVEVNLRQFLSLADPDVISEMPPLERAQSLLMVAKATTILFALRLRCNGVHPDDHPVKAELERINLYEKKLERL
MDLSKAPLRRSTTLNYQAATRVIEHSLPDLTPEQRRNMKDISRGERHRMSSTETSMPKRRKFPDKSSVQAAAKEFLEKAAREIVGVQAGGFKGPIQVDSD
TTDEDEAPKA

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G25080 Sas10/Utp3/C1D family (.1) Lus10026882
[exp]
0 1
AT3G07170 Sterile alpha motif (SAM) doma... Lus10025917
[exp]
2.4 0.8686
AT1G03150 Acyl-CoA N-acyltransferases (N... Lus10042595
[exp]
3.9 0.8357
AT1G12700 RPF1 RNA processing factor 1, ATP b... Lus10036865
[exp]
4.9 0.8317
AT5G51140 Pseudouridine synthase family ... Lus10022437
[exp]
5.3 0.8599
AT1G19100 Histidine kinase-, DNA gyrase ... Lus10042100
[exp]
5.5 0.8559
AT4G31930 Mitochondrial glycoprotein fam... Lus10017126
[exp]
6.3 0.8037
AT5G27460 Tetratricopeptide repeat (TPR)... Lus10020948
[exp]
7.9 0.8313
AT3G48210 unknown protein Lus10042089
[exp]
8.5 0.8447
AT1G64880 Ribosomal protein S5 family pr... Lus10034602
[exp]
12.4 0.8136
AT5G59180 NRPB7 DNA-directed RNA polymerase II... Lus10001559
[exp]
12.6 0.8054

Lus10026882 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.