Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31850 741 / 0 PGR3 proton gradient regulation 3 (.1) AT1G63080 230 / 2e-66 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62670 224 / 5e-64 RPF2 rna processing factor 2 (.1) AT1G62930 223 / 1e-63 RPF3 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G62910 223 / 2e-63 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G22470 221 / 7e-63 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63130 216 / 3e-61 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G12775 214 / 2e-60 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63400 211 / 1e-59 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G12620 211 / 3e-59 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003424 [exp] 1019 / 0 AT4G31850 1373 / 0.0 proton gradient regulation 3 (.1) Lus10036020 [exp] 236 / 5e-67 AT5G61990 592 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10027916 [exp] 219 / 2e-61 AT5G39710 1038 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013283 [exp] 216 / 7e-61 AT1G05670 785 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) Lus10026558 [exp] 214 / 1e-58 AT5G65560 881 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10034616 [exp] 211 / 1e-58 AT1G22960 617 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10000364 [exp] 210 / 4e-58 AT1G22960 619 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10017684 [exp] 209 / 4e-58 AT4G28010 596 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027914 [exp] 210 / 5e-58 AT5G39710 1025 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G264800 [exp] 799 / 0 AT4G31850 1428 / 0.0 proton gradient regulation 3 (.1) Potri.016G025600 [exp] 248 / 2e-72 AT3G22470 426 / 3e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G046000 [exp] 246 / 1e-71 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G038300 [exp] 233 / 2e-67 AT1G12700 490 / 8e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G050400 [exp] 227 / 3e-65 AT1G12700 504 / 3e-171 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.006G271200 [exp] 225 / 8e-65 AT1G62930 475 / 3e-161 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G038400 [exp] 222 / 2e-63 AT1G12700 478 / 7e-161 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.004G074500 [exp] 218 / 2e-62 AT1G62930 478 / 1e-162 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G046200 [exp] 219 / 3e-62 AT1G12700 501 / 5e-170 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G046100 [exp] 219 / 3e-62 AT1G12700 512 / 1e-173 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10026884 pacid=23142920 polypeptide=Lus10026884 locus=Lus10026884.g ID=Lus10026884.BGIv1.0 annot-version=v1.0 ATGACCGTGCTTCTACTTTGTTCTTCGAGTATGTGCTGCGCTAGTATCAATTGCAGCCTCGCACTCGCAGAGCACACACAATTTTCACATTTAGGCTGTA GTTCAGTTTCCTTACGAGGTATACAGGTTGCAGATTTGAGGTTTTCATCTTTTCGGTATCTTGAATATGGGAAGAAACTCAGGAAACGGAAACTAGGTTT ACGTGTAATTGCACTGGATAGCCAACGGGATGTGATGGATGTGAAGAGAAAACTCAGAAATCGAGTTTCCGCTGAGGATGTTATGAGCTTTCTTAGTTCA ACTTCGGACTTAAGTGCGGCATTCTCCTACTTCAATTCGGTTTCAAAGCTTCCTACTGTGGTTCACACCACTGGAACATGTAATCTAATGCTTGAGCTCT TAAGGGTTCACGGAAGGGTGGAGGATATGGTTAATGTATTCGATTTGATGCAGAAACAGATCATAAGGAGGGACGTCGAAACTTATTTGACTATATTCAA GGCCCTGAATATAAGAGGTGGCCTTAGAAAAACCCCATTTGCGCTGGAAAAGATGAAGCAAGTAGGGATTGTTTTGAATGTTTACTCCTATAATGGCCTG ATCTACTCACTACTTCAATCCGGTCTTTGTCGAGAGGCTCTAGAGGTGTATAGACGAATGGTTTCAGAAGGTCTGAAACCAAGCCTTAAGACGTATTCCG CTCTTATGGTAGCATTGGGGAAGAGAAGGAACATAGAAGGAGTGATGGATTTGTTGGAAGAGATGGGGCGTTTAGGATTGAGACCAAATGTTTACACATA CACCATATGCATTAGAGTGCTCGGAGGAGCTGGAAAAATTGACGATGCATTCAGGCTAATGAAGAGAATGGATGATGAGGGCTGTGGACCTGATGTTGTT ACTTATACAGTTCTTATCGATGCTCTCTGTACCGCAGGCAAGCTAGACAAAGTTGCAGAATTGTTCTCACAGATGAAGGCTACTAGTCACAAGCCTGACC GAGTAACCTATATCACCTTGTTGGACAGATACAGTGATTGCGGAGACGTAGCTATGGTAAAAAAGATTTGGAATGAAATGGAAGCTGATGGGTATGCTCC TGATGTAGTTACTTTTACAGTGCTGGTCAATGCTTTATGCAAAGCACACAATATAGATGAAGCATTTCACACATTAGATGTCATGAGAAAGCAAGGCATT CTGCCGAATCTTCATACTTACAATACTTTGATATGTGGACTATTGAGGGTGAACAGGGTAGCAGATGCACTAGATATGTTCAAGAATCTGGATACTTTTG GTGTTAAGCCTACAGCTTATACATACATCCTTTTCATAGATTACTATGGGAAATCTGGTGACTCTAGTAAAGCGCTTGAGACCTTTGAGAAAATGAAGCT TAGTGGCATTGCTCCCAACATTGTTGCTTGTAATGCATCTCTATATAGTCTTGCTGAAAGTGGTAGGCTAGCGGAGGCAAAAGCTATTTTCAATGAGCTG AAAAGAAGTGGCCTTGTTCCAGATTCAGTAACCTACAACATGATGATGAAGTGCTACAGTAACGCTGGAAAAGTGGATGAAGCTATTAACTTACTACCCG AGATGGTGGAGAATAACTGCGAACCTGATGTCATGATAATTAATTCTTTGATTAACACTCTTTACAAGGCCAACCGAGTGGATGAGGCATGGGAAATGTT CTGCAGAATGAAGGACATGAAACTTGCTCCTACTGTCGTGACTTACAACACATTGCTATATAGGCTGGGGAAAGAGGACGCACATATCAAAAGAACTGAA CTTTGGCTAAACAAAATATATGAATGCAGTTACCTTGAAATGGGGAACAGTGACTTTGAGGAAATCAGGGTTGGGCTGAAAATCGGCATCAAGTTTATCG CTTTTTTGGTTCAGGGGATTGGAGAAACATTTGGAAGAGTTACCATTGAAGAGTTACCAATCAATGGCATTCTGTATGCCGGACTCTTTGTGCTTCAAAT GGCTGGAGGGATCGTTGTTATGATCTCTGGTTTGTCAGGAATCTCTGTTGGACAGAGGGTCTACGAATCTGGTGTGATGTTTGGAACCTTCTCTTCATCT TGTTGA
AA sequence Show only first row Show all	>Lus10026884 pacid=23142920 polypeptide=Lus10026884 locus=Lus10026884.g ID=Lus10026884.BGIv1.0 annot-version=v1.0 MTVLLLCSSSMCCASINCSLALAEHTQFSHLGCSSVSLRGIQVADLRFSSFRYLEYGKKLRKRKLGLRVIALDSQRDVMDVKRKLRNRVSAEDVMSFLSS TSDLSAAFSYFNSVSKLPTVVHTTGTCNLMLELLRVHGRVEDMVNVFDLMQKQIIRRDVETYLTIFKALNIRGGLRKTPFALEKMKQVGIVLNVYSYNGL IYSLLQSGLCREALEVYRRMVSEGLKPSLKTYSALMVALGKRRNIEGVMDLLEEMGRLGLRPNVYTYTICIRVLGGAGKIDDAFRLMKRMDDEGCGPDVV TYTVLIDALCTAGKLDKVAELFSQMKATSHKPDRVTYITLLDRYSDCGDVAMVKKIWNEMEADGYAPDVVTFTVLVNALCKAHNIDEAFHTLDVMRKQGI LPNLHTYNTLICGLLRVNRVADALDMFKNLDTFGVKPTAYTYILFIDYYGKSGDSSKALETFEKMKLSGIAPNIVACNASLYSLAESGRLAEAKAIFNEL KRSGLVPDSVTYNMMMKCYSNAGKVDEAINLLPEMVENNCEPDVMIINSLINTLYKANRVDEAWEMFCRMKDMKLAPTVVTYNTLLYRLGKEDAHIKRTE LWLNKIYECSYLEMGNSDFEEIRVGLKIGIKFIAFLVQGIGETFGRVTIEELPINGILYAGLFVLQMAGGIVVMISGLSGISVGQRVYESGVMFGTFSSS C

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G31850		PGR3	proton gradient regulation 3 (...		Lus10026884 [exp]	0	1
AT3G48500		PDE312, PTAC10	PLASTID TRANSCRIPTIONALLY ACTI...		Lus10005031 [exp]	2.2	0.9621
AT4G18130		PHYE	phytochrome E (.1)		Lus10004593 [exp]	2.6	0.9455
AT5G16715		EMB2247	embryo defective 2247, ATP bin...		Lus10028505 [exp]	2.8	0.9544
AT5G49030		OVA2	ovule abortion 2, tRNA synthet...		Lus10043413 [exp]	4.0	0.9445
AT1G01320			Tetratricopeptide repeat (TPR)...		Lus10030259 [exp]	4.1	0.9303
AT1G11290		CRR22	CHLORORESPIRATORY REDUCTION22,...		Lus10042924 [exp]	4.9	0.9458
AT5G15700			DNA/RNA polymerases superfamil...		Lus10035150 [exp]	5.7	0.9527
AT3G04260		PDE324, PTAC3	PIGMENT DEFECTIVE 324, plastid...		Lus10003578 [exp]	6.3	0.9504
AT5G57180		CIA2	chloroplast import apparatus 2...		Lus10025459 [exp]	8.1	0.9363
AT5G26742		EMB1138	embryo defective 1138, DEAD bo...		Lus10001057 [exp]	8.4	0.9474

Compare expression of checked genes

Lus10026884 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.