Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31860 580 / 0 Protein phosphatase 2C family protein (.1.2) AT2G25070 559 / 0 Protein phosphatase 2C family protein (.1) AT2G33700 130 / 4e-34 Protein phosphatase 2C family protein (.1) AT5G10740 129 / 1e-33 Protein phosphatase 2C family protein (.1) AT2G25620 129 / 1e-33 AtDBP1 DNA-binding protein phosphatase 1 (.1) AT5G24940 128 / 9e-33 Protein phosphatase 2C family protein (.1) AT3G51470 125 / 2e-32 Protein phosphatase 2C family protein (.1) AT1G48040 117 / 3e-29 Protein phosphatase 2C family protein (.1) AT1G17550 118 / 5e-29 HAB2 homology to ABI2 (.1) AT1G72770 116 / 2e-28 HAB1 HYPERSENSITIVE TO ABA1, homology to ABI1 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003423 [exp] 682 / 0 AT4G31860 612 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10042416 [exp] 625 / 0 AT4G31860 610 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10026253 [exp] 614 / 0 AT2G25070 607 / 0.0 Protein phosphatase 2C family protein (.1) Lus10026886 [exp] 176 / 1e-49 AT2G44880 376 / 3e-124 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10008091 [exp] 129 / 1e-33 AT2G25620 488 / 1e-173 DNA-binding protein phosphatase 1 (.1) Lus10013124 [exp] 129 / 2e-33 AT2G25620 502 / 7e-179 DNA-binding protein phosphatase 1 (.1) Lus10016030 [exp] 128 / 3e-33 AT2G33700 550 / 0.0 Protein phosphatase 2C family protein (.1) Lus10012244 [exp] 128 / 7e-33 AT2G33700 533 / 0.0 Protein phosphatase 2C family protein (.1) Lus10030731 [exp] 127 / 8e-33 AT2G33700 553 / 0.0 Protein phosphatase 2C family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G017701 [exp] 602 / 0 AT4G31860 609 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.006G265100 [exp] 599 / 0 AT4G31860 606 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.001G043000 [exp] 541 / 0 AT4G31860 548 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.003G183800 [exp] 538 / 0 AT4G31860 547 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.018G017800 [exp] 253 / 2e-83 AT4G31860 253 / 5e-84 Protein phosphatase 2C family protein (.1.2) Potri.007G058700 [exp] 134 / 2e-35 AT3G51470 502 / 3e-179 Protein phosphatase 2C family protein (.1) Potri.002G007500 [exp] 131 / 2e-34 AT2G33700 560 / 0.0 Protein phosphatase 2C family protein (.1) Potri.005G102500 [exp] 129 / 1e-33 AT3G51470 496 / 8e-177 Protein phosphatase 2C family protein (.1) Potri.018G033000 [exp] 127 / 5e-33 AT2G25620 478 / 3e-169 DNA-binding protein phosphatase 1 (.1) Potri.005G253700 [exp] 126 / 2e-32 AT2G33700 584 / 0.0 Protein phosphatase 2C family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0238 [flax] [poplar] PP2C PF00481 [flax] [poplar] PP2C Protein phosphatase 2C
Representative CDS sequence Show only first row Show all	>Lus10026885 pacid=23142947 polypeptide=Lus10026885 locus=Lus10026885.g ID=Lus10026885.BGIv1.0 annot-version=v1.0 ATGGGTATATATCTCAGTTCTCCCAAAACAGAGAAATTCTCAGAGGATGGAGAAAATGCTAAGCTCAGATATGGTTTATCGTCCATGCAAGGGTGGCGTG CGACCATGGAAGATGCGCATGCTGCTTTCCCTGATCTGGATGCTTCTACTTCATTCTTCGGTGTTTACGATGGCCATGGAGGTAAAGTTGTTGCAAAGTT CTGTGCCAAATTTCTTCATCAACAAGTTCTCAAGCATGAGGCATATATAGCTGGTGATATAGGAACTTCTCTTCATAGGAACGTCTCTTCAGAAATCATT TTTCAGATAACCATACCATTACTGTTTCTATTGGACTCTTGTTTCCTTATCACTGATGATCTTAGTATTACATATACAATGGATGAAATGATGCGTGGAC AAAGAGGATGGAGAGAGTTAGCTGTTTTAGGTGATAAAATAAATAAGTTCAGTGGCATGATTGAAGGGTTAATATGGTCACCAAAGGCTGGTGAAAACAG TGAGCAACATGATGATTGGGCTTTTGAAGAGGGACCACATGCTGATTTCTCTGGTCCTACATCTGGGAGCACGGCTTGTGTTGCAGTTATAAGAAACAAT CAACTTGTCGTTGCGAATGCTGGCGATTCTCGATGTGTGATATCACGAAAGGGACAGGCATACAATCTGTCCAGAGATCACAAACCTGATCTTGAGGCTG AGAAAGAAAGGATTTTAAAAGCTGGTGGCTTCATACATGCAGGACGTGTCAATGGCAGCTTGAATCTTGCAAGAGCTATTGGTGACATGGAATTCAAACA GAACAAGTTCTTACCTGCTGAAAAGCAAGTTGTGACGGCCAATCCAGATATAAACACTGTTGAGCTTTGTGAGGATGATGATTTTCTTGTTCTAGCATGC GATGGAGTATGGGATTGCATGTCAAGTCAGCAACTGGTAGACTTTATTCACGAGCAACTGCACTCGGAAACTAAGCTATCGGCCATTTGTGAGAGAGTAC TCGATAGGTGTTTAGCACCATCAACAGCCGGTGAGGGATGTGACAACATGACAATGATCCTGGTGCAGCTTAAGAAACCCGTGGTGGCGAGTAGCTCCTC CGCAGACGAGAAAACCTCCTCTGAACCTGTTGCTATCAACCCCGAACCCATTTCATCGGAGCCTATGCCTGAGTCGACTAGACCCGAGAGCAGTGAATGA
AA sequence Show only first row Show all	>Lus10026885 pacid=23142947 polypeptide=Lus10026885 locus=Lus10026885.g ID=Lus10026885.BGIv1.0 annot-version=v1.0 MGIYLSSPKTEKFSEDGENAKLRYGLSSMQGWRATMEDAHAAFPDLDASTSFFGVYDGHGGKVVAKFCAKFLHQQVLKHEAYIAGDIGTSLHRNVSSEII FQITIPLLFLLDSCFLITDDLSITYTMDEMMRGQRGWRELAVLGDKINKFSGMIEGLIWSPKAGENSEQHDDWAFEEGPHADFSGPTSGSTACVAVIRNN QLVVANAGDSRCVISRKGQAYNLSRDHKPDLEAEKERILKAGGFIHAGRVNGSLNLARAIGDMEFKQNKFLPAEKQVVTANPDINTVELCEDDDFLVLAC DGVWDCMSSQQLVDFIHEQLHSETKLSAICERVLDRCLAPSTAGEGCDNMTMILVQLKKPVVASSSSADEKTSSEPVAINPEPISSEPMPESTRPESSE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G31860			Protein phosphatase 2C family ...		Lus10026885 [exp]	0	1
AT3G16565			alanine-tRNA ligases;nucleic a...		Lus10000503 [exp]	8.3	0.8817
AT5G15730		CRLK2, AtCRLK2	calcium/calmodulin-regulated r...		Lus10008540 [exp]	11.1	0.8813
AT5G49570		ATPNG1	peptide-N-glycanase 1 (.1)		Lus10009179 [exp]	13.3	0.8602
AT1G63420			Arabidopsis thaliana protein o...		Lus10024519 [exp]	15.2	0.8694
AT5G17290		ATG5, APG5, ATA...	AUTOPHAGY 5, autophagy protein...		Lus10029817 [exp]	16.7	0.8574
AT1G75310		AUL1	auxilin-like 1, auxin-like 1 p...		Lus10024270 [exp]	18.2	0.8766
AT5G55060			unknown protein		Lus10021546 [exp]	18.3	0.8688
AT3G55960			Haloacid dehalogenase-like hyd...		Lus10028284 [exp]	21.4	0.8698
AT2G19480		NFA2, NFA02, NA...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10037630 [exp]	24.9	0.8666
AT1G63800		UBC5	ubiquitin-conjugating enzyme 5...		Lus10024638 [exp]	28.5	0.8391

Compare expression of checked genes

Lus10026885 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.