Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G44880 377 / 1e-124 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT5G66520 257 / 8e-78 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G48910 253 / 5e-76 LPA66 LOW PSII ACCUMULATION 66, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G37380 249 / 5e-75 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G21065 244 / 2e-74 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT2G22410 248 / 6e-74 SLO1 SLOW GROWTH 1 (.1) AT1G33350 244 / 8e-74 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G20540 243 / 3e-73 MEF21 mitochondrial editing factor 21 (.1) AT1G05750 241 / 3e-73 PDE247, CLB19 pigment defective 247, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G29760 245 / 2e-72 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003422 [exp] 578 / 0 AT2G44880 679 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10020918 [exp] 271 / 2e-83 AT2G29760 474 / 3e-159 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10029344 [exp] 271 / 3e-83 AT5G06540 803 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10004052 [exp] 261 / 2e-79 AT1G31430 684 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10040680 [exp] 261 / 4e-78 AT2G29760 926 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018223 [exp] 258 / 2e-77 AT2G29760 931 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10002288 [exp] 254 / 9e-77 AT1G31430 689 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10030225 [exp] 244 / 7e-76 AT5G08510 472 / 2e-165 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10005987 [exp] 248 / 2e-75 AT5G08510 602 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G046200 [exp] 437 / 2e-147 AT2G44880 676 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.003G223900 [exp] 261 / 5e-80 AT5G56310 508 / 1e-176 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G044700 [exp] 265 / 9e-80 AT2G29760 1013 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G019500 [exp] 263 / 1e-79 AT2G22410 791 / 0.0 SLOW GROWTH 1 (.1) Potri.004G125500 [exp] 261 / 1e-79 AT3G29230 829 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G086200 [exp] 262 / 5e-79 AT4G14820 840 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G065500 [exp] 256 / 1e-77 AT5G06540 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.014G191200 [exp] 255 / 5e-77 AT5G48910 852 / 0.0 LOW PSII ACCUMULATION 66, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G369900 [exp] 255 / 5e-77 AT5G66520 512 / 2e-175 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G031600 [exp] 253 / 3e-75 AT3G15930 784 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0238 [flax] [poplar] PP2C PF00481 [flax] [poplar] PP2C Protein phosphatase 2C CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10026886 pacid=23142937 polypeptide=Lus10026886 locus=Lus10026886.g ID=Lus10026886.BGIv1.0 annot-version=v1.0 ATGCCACGTAGGAATGTGATCACTTGGACTACTATGATTCATGGGTACTGCAATGTTGGTGACGTTCTATCTGCCAGATTTCTATTTGATTCCATGCCTG GGAAGAACCTATTTTCTTGGAATGCAATGATTGGTGGGTATTGCCAGAACAAACAACCAGAAGCTGTAACACTGTTTCGTGAAATGCAGTCTAATACATC ACTTGAACCAGACGAAGTTACAGTAGTTTCCATTCTTCCAGCAATTGCTGAGTTGGGGGCTGTGGAATTGGGATGTTGGATTCATCATTACGTTGGGAGA AAAAAACTCGACCGATCAACAAAAGTCAGCACCTCCCTTGTGGACATGTATGCAAAATGTGGCGAAATCACAAAGGCAAGAAGAGTATTTGACCAGATTC CTAAGAAGGAAATAACAGCTTGGAACGCTCTAATAGCTGGACTTGCAGTCAATGGAGATGCTAGGGAAGCTATACAGGTGTTCATGGATATGCAACTTGA AGGAATAAAACCAAATGACATAACCATGTTAGGTGTTCTTAGTGCTTGTAACCATGGTGGTCTTTTAGAAGAGGGGAGGAGATGGTTTGAGGCCATGGAT GGCTTTGAGCTTACCCCAAGAATCGAGCATTATGGGTGTATGATCGATTTGCTAGGGAGAGGTGGCTGCTTGGAGGAAGCAGAGAATTTGATGAACAGCA TGCCTTTTGAGGCCAATGGTAACTTATATGCCAAAGATAAGAGATGGGGACAAGTGGAAGAAGTAAAAGGTTTGATGAAGAGAAATGGAGCGAAAAAGGA GGCTGGCAGCAGTGCTATAGAGGTTGATGGGGAGGTTTCGGAATTCATATCTGGAGGCAGAGAACATCCCCAATGGGATAGAATAAAGCTGGTGATTGGT CAGCTGAGAGATCAAATGTATCGGATAATATCTGAAAAGCTATATGTTTATTCATTGACACTCCCGTCATGGATGGGAATTCTAGAGGCATACAATCTGT CCAGAGATCACAAACCTGATCTTGAGGCTGAGAAAGAAAGGATTTTAAAAGCTGGTGGCTTCATACATGCAGGACGTGTCAATGGCAGCTTGAATCTTGC AAGAGCTATTGGTGACATGGAATTCAAACAGAACAAGTTCTTACCTGCTGAAAAGCAAGTTGTGACGGCCAATCCAGATATAAACACTGTTGAGCTTTGT GAGGATGATGATTTTCTTGTTCTAGCATGCGATGGAATTCCTAAGAAGGAAATAACAGCTTGGAACGCTCTAACAGCTGGACTTGCAGTCAATGGAGATG CTAGGGAAGCTATACAGGTGTTCATGGATATGCAACTTGAAGGAATAAAACCAAATGACATAACCATGTTAGGTGTTCTTAGTGCTTGTAACCATGGTGG TCTTTTAGAAGAGGGGAGGAGATGGTTTGAGGCCATGGATGGCTTTGAGCTTACCTCTAGAATCGAGCATTATGGGTGTATGATCGATTTGCTAGGGATA GGAGGGTGCTTAGAGGAAGCAGAGGATTTGATGAACATCATTCCTTTTGAGGCCAATGGTATAATGTTGAGCTCGTTTTTGTCTGCCTGCGTGAACTCCA AGGACATGATAAGGGCAGAAAAGAGTACTAAACCAGGCAGTTAA
AA sequence Show only first row Show all	>Lus10026886 pacid=23142937 polypeptide=Lus10026886 locus=Lus10026886.g ID=Lus10026886.BGIv1.0 annot-version=v1.0 MPRRNVITWTTMIHGYCNVGDVLSARFLFDSMPGKNLFSWNAMIGGYCQNKQPEAVTLFREMQSNTSLEPDEVTVVSILPAIAELGAVELGCWIHHYVGR KKLDRSTKVSTSLVDMYAKCGEITKARRVFDQIPKKEITAWNALIAGLAVNGDAREAIQVFMDMQLEGIKPNDITMLGVLSACNHGGLLEEGRRWFEAMD GFELTPRIEHYGCMIDLLGRGGCLEEAENLMNSMPFEANGNLYAKDKRWGQVEEVKGLMKRNGAKKEAGSSAIEVDGEVSEFISGGREHPQWDRIKLVIG QLRDQMYRIISEKLYVYSLTLPSWMGILEAYNLSRDHKPDLEAEKERILKAGGFIHAGRVNGSLNLARAIGDMEFKQNKFLPAEKQVVTANPDINTVELC EDDDFLVLACDGIPKKEITAWNALTAGLAVNGDAREAIQVFMDMQLEGIKPNDITMLGVLSACNHGGLLEEGRRWFEAMDGFELTSRIEHYGCMIDLLGI GGCLEEAEDLMNIIPFEANGIMLSSFLSACVNSKDMIRAEKSTKPGS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G44880			Pentatricopeptide repeat (PPR-...		Lus10026886 [exp]	0	1
AT3G59390			unknown protein		Lus10007819 [exp]	5.8	0.7547
AT4G00960			Protein kinase superfamily pro...		Lus10015423 [exp]	7.0	0.8098
AT4G18750		DOT4	DEFECTIVELY ORGANIZED TRIBUTAR...		Lus10000119 [exp]	10.2	0.6968
AT1G16916			unknown protein		Lus10032325 [exp]	12.0	0.7874
AT5G02930			F-box/RNI-like superfamily pro...		Lus10024702 [exp]	13.0	0.7797
AT4G02020		SDG10, SWINGER,...	SWINGER, SET DOMAIN-CONTAINING...		Lus10041386 [exp]	13.6	0.7940
AT5G54520			Transducin/WD40 repeat-like su...		Lus10014805 [exp]	14.9	0.7912
AT2G41790			Insulinase (Peptidase family M...		Lus10018071 [exp]	16.5	0.7715
					Lus10008178 [exp]	17.7	0.7352
AT1G32340		NHL8	NDR1/HIN1-like 8 (.1)		Lus10004569 [exp]	18.0	0.7043

Compare expression of checked genes

Lus10026886 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.