Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31870 330 / 1e-115 ATGPX7 glutathione peroxidase 7 (.1) AT2G25080 323 / 1e-112 ATGPX1 glutathione peroxidase 1 (.1) AT4G11600 254 / 1e-85 LSC803, PHGPX, ATGPX6 glutathione peroxidase 6 (.1) AT2G43350 242 / 3e-81 ATGPX3 glutathione peroxidase 3 (.1.2) AT2G31570 237 / 6e-80 ATGPX2 glutathione peroxidase 2 (.1) AT3G63080 216 / 3e-71 ATGPX5, MEE42 maternal effect embryo arrest 42, glutathione peroxidase 5 (.1) AT1G63460 214 / 7e-71 ATGPX8 glutathione peroxidase 8 (.1) AT2G48150 209 / 1e-68 ATGPX4 glutathione peroxidase 4 (.1) AT3G26060 40 / 0.0009 ATPRXQ ,ATPRX Q peroxiredoxin Q, Thioredoxin superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003421 [exp] 424 / 4e-151 AT4G31870 319 / 9e-110 glutathione peroxidase 7 (.1) Lus10042418 [exp] 357 / 6e-126 AT4G31870 329 / 2e-115 glutathione peroxidase 7 (.1) Lus10008022 [exp] 247 / 1e-83 AT4G11600 301 / 1e-105 glutathione peroxidase 6 (.1) Lus10008499 [exp] 249 / 2e-83 AT4G11600 307 / 2e-106 glutathione peroxidase 6 (.1) Lus10008537 [exp] 246 / 2e-83 AT4G11600 299 / 1e-104 glutathione peroxidase 6 (.1) Lus10027021 [exp] 245 / 6e-83 AT2G31570 266 / 2e-92 glutathione peroxidase 2 (.1) Lus10029651 [exp] 215 / 3e-71 AT2G48150 274 / 2e-95 glutathione peroxidase 4 (.1) Lus10008023 [exp] 217 / 1e-70 AT1G63460 265 / 9e-91 glutathione peroxidase 8 (.1) Lus10000603 [exp] 213 / 2e-70 AT4G11600 256 / 9e-88 glutathione peroxidase 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G265400 [exp] 351 / 5e-124 AT2G25080 343 / 6e-121 glutathione peroxidase 1 (.1) Potri.001G105200 [exp] 254 / 2e-86 AT4G11600 298 / 3e-104 glutathione peroxidase 6 (.1) Potri.007G126600 [exp] 254 / 4e-86 AT2G31570 281 / 1e-97 glutathione peroxidase 2 (.1) Potri.003G126100 [exp] 251 / 2e-84 AT4G11600 307 / 9e-107 glutathione peroxidase 6 (.1) Potri.001G105100 [exp] 228 / 8e-76 AT1G63460 283 / 5e-99 glutathione peroxidase 8 (.1) Potri.014G138800 [exp] 218 / 3e-72 AT2G48150 271 / 1e-94 glutathione peroxidase 4 (.1) Potri.018G017500 [exp] 215 / 4e-71 AT2G25080 209 / 4e-69 glutathione peroxidase 1 (.1) Potri.018G063300 [exp] 43 / 8e-05 AT3G26060 275 / 1e-94 peroxiredoxin Q, Thioredoxin superfamily protein (.1.2) Potri.006G137500 [exp] 42 / 0.0001 AT3G26060 286 / 5e-99 peroxiredoxin Q, Thioredoxin superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF00255 [flax] [poplar] GSHPx Glutathione peroxidase
Representative CDS sequence Show only first row Show all	>Lus10026887 pacid=23142851 polypeptide=Lus10026887 locus=Lus10026887.g ID=Lus10026887.BGIv1.0 annot-version=v1.0 ATGGCGTCTTCTTTACCGTTCGCTGCAACTCCCTCCTCTCCTTCGCACAAGTACATCGCAGAAAGGCCAAGCTGTTATTCACCCAACCAGCAGTCATTCC GCGTTTCCGTCGCATCAGCAAGGTCGTCGCCGGTGTTCGCGTCTTCAAAATCAGGGTTTCTGCGACATGGGTTGTCTTTACAATCGCAGAATTCAGCTGG GCTTGTTCGAAAGAATCCTTCTTTCCGCGTTTTTGCCAGAGCCACCACCGAGAAATCAATCCACGACTTCACTGTAAAGGACATTGATGGTAAAAACGTG TCTCTTAGCAAATTCAAAGGCAAAGCTCTGTTGATTGTCAATGTTGCTTCCAGATGTGGTTTGACATCTTCCAACTATTCAGAACTATCGCACGTTTATG AGAAGTACAAGACACAAGGATTTGAAATCCTAGCCTTCCCTTGCAATCAGTTTGGAGGGCAAGAGCCAGGATCGAACCCGGAGATCAAGCAGTTTGCTTG TACCAGATTCAAAGCTGATTTTCCTATATTTGACAAGGTTGACGTGAATGGGCCGAGCACAGCACCAGTTTACCAGTTTCTGAAGTCAAGTGCTGGGGGA TTTTTAGGTGATTTGATCAAGTGGAACTTTGAGAAGTTCTTGGTGGACAAGAATGGTAAGGTTGTGGAACGGTATGCCCCAACTACATCACCTTTCCAAA TCGAGAAGGATATTCAGAAGCTGCTTGCCGCGTAA
AA sequence Show only first row Show all	>Lus10026887 pacid=23142851 polypeptide=Lus10026887 locus=Lus10026887.g ID=Lus10026887.BGIv1.0 annot-version=v1.0 MASSLPFAATPSSPSHKYIAERPSCYSPNQQSFRVSVASARSSPVFASSKSGFLRHGLSLQSQNSAGLVRKNPSFRVFARATTEKSIHDFTVKDIDGKNV SLSKFKGKALLIVNVASRCGLTSSNYSELSHVYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKQFACTRFKADFPIFDKVDVNGPSTAPVYQFLKSSAGG FLGDLIKWNFEKFLVDKNGKVVERYAPTTSPFQIEKDIQKLLAA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G31870		ATGPX7	glutathione peroxidase 7 (.1)		Lus10026887 [exp]	0	1
AT5G52420			unknown protein		Lus10027493 [exp]	2.2	0.9204
AT1G68660			Ribosomal protein L12/ ATP-dep...		Lus10041479 [exp]	2.4	0.9410
AT4G09350		NdhT, CRRJ	NADH dehydrogenase-like comple...		Lus10042771 [exp]	2.6	0.9468
AT3G23400		FIB4	fibrillin 4, Plastid-lipid ass...		Lus10011803 [exp]	4.1	0.8966
AT1G62960		ACS10	ACC synthase 10 (.1)		Lus10007021 [exp]	4.4	0.8875
AT4G09350		NdhT, CRRJ	NADH dehydrogenase-like comple...		Lus10029740 [exp]	4.7	0.9413
AT1G68660			Ribosomal protein L12/ ATP-dep...		Lus10034292 [exp]	5.5	0.9190
AT2G21970		SEP2	stress enhanced protein 2 (.1)		Lus10035846 [exp]	5.9	0.9181
AT1G79510			Uncharacterized conserved prot...		Lus10009597 [exp]	6.3	0.9351
AT2G15020			unknown protein		Lus10026592 [exp]	7.3	0.9167

Compare expression of checked genes

Lus10026887 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.