Plant FIBer expression Database

Lus10026889 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G57910 45 / 3e-06 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10022161
[exp]
45 / 3e-06 AT5G57910 110 / 3e-29 unknown protein
Lus10036255
[exp]
44 / 8e-06 AT5G57910 105 / 2e-27 unknown protein
Lus10036591
[exp]
44 / 8e-06 AT5G57910 117 / 4e-32 unknown protein
Lus10035808
[exp]
42 / 5e-05 AT5G57910 116 / 6e-32 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G264900
[exp]
66 / 1e-14 ND /
Potri.006G183000
[exp]
43 / 2e-05 AT4G30630 105 / 2e-27 unknown protein
Potri.018G105300
[exp]
42 / 3e-05 AT5G57910 102 / 8e-27 unknown protein
PFAM info
Representative CDS sequence
>Lus10026889 pacid=23142968 polypeptide=Lus10026889 locus=Lus10026889.g ID=Lus10026889.BGIv1.0 annot-version=v1.0
ATGAAGAACAACAACAAGAGAAGGGTCTCCGTTGTCCGTGACACTCACCAATCTGAATATTCTTTAGAAGACGACGAGGAAACTAGGTTTAGAGCCAGGC
AGAAAGTACTGTTTCAGGATTTCTTGAATCTGGAACAGGAATTTGTTTCGAAGAAGAAGCAGCTTGCGTTTGCAAAGGAGAGGAGGCAGACGCTTTTGCA
TGAAGTTGAGTTCCTAAGACGAAGGCACGCACATCTAATGAAGATGCAATCTGATGAACAAGAAGAGCAGGATCAACGAGTTAAGTCGGTTCAAGCTGGT
GTCGATGTGAAGAGGAAGTCTGCCAATGGTTCACTTGACAGAGGTAAGAAGAAGAAGAAGAACAAGACGGACAAACATACCGACTTCTCGGCAAGATATG
AACTGTCCCTCGAGTGA
AA sequence
>Lus10026889 pacid=23142968 polypeptide=Lus10026889 locus=Lus10026889.g ID=Lus10026889.BGIv1.0 annot-version=v1.0
MKNNNKRRVSVVRDTHQSEYSLEDDEETRFRARQKVLFQDFLNLEQEFVSKKKQLAFAKERRQTLLHEVEFLRRRHAHLMKMQSDEQEEQDQRVKSVQAG
VDVKRKSANGSLDRGKKKKKNKTDKHTDFSARYELSLE

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G30630 unknown protein Lus10026889
[exp]
0 1
AT1G69550 disease resistance protein (TI... Lus10000744
[exp]
1.0 0.7285
AT1G67730 ATKCR1, YBR159,... beta-ketoacyl reductase 1 (.1) Lus10036940
[exp]
7.5 0.6849
AT4G37030 unknown protein Lus10001003
[exp]
15.9 0.5948
AT5G10480 PEP, PAS2 PEPINO, PASTICCINO 2, Protein-... Lus10025335
[exp]
21.5 0.6724
AT5G36260 Eukaryotic aspartyl protease f... Lus10020201
[exp]
38.2 0.6238
AT5G05190 Protein of unknown function (D... Lus10030508
[exp]
49.8 0.5872
AT5G67150 HXXXD-type acyl-transferase fa... Lus10029485
[exp]
50.5 0.5620
Lus10012862
[exp]
56.3 0.6335
AT2G35130 Tetratricopeptide repeat (TPR)... Lus10018318
[exp]
59.1 0.6194
AT1G62640 KAS III, KASIII 3-ketoacyl-acyl carrier protei... Lus10004342
[exp]
64.9 0.6307

Lus10026889 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.