Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10820 540 / 0 Major facilitator superfamily protein (.1) AT1G79710 425 / 6e-144 Major facilitator superfamily protein (.1) AT5G25050 393 / 2e-131 Major facilitator superfamily protein (.1) AT5G25040 339 / 3e-110 Major facilitator superfamily protein (.1.2.3) AT2G32040 144 / 6e-37 Major facilitator superfamily protein (.1) AT5G54860 141 / 3e-36 Major facilitator superfamily protein (.1) AT1G04570 116 / 2e-27 Major facilitator superfamily protein (.1) AT2G33280 88 / 2e-18 Major facilitator superfamily protein (.1) AT1G64890 55 / 8e-08 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026893 [exp] 438 / 6e-149 AT5G25050 628 / 0.0 Major facilitator superfamily protein (.1) Lus10003419 [exp] 433 / 4e-147 AT5G25050 625 / 0.0 Major facilitator superfamily protein (.1) Lus10041620 [exp] 397 / 4e-133 AT1G79710 644 / 0.0 Major facilitator superfamily protein (.1) Lus10024099 [exp] 386 / 1e-128 AT1G79710 630 / 0.0 Major facilitator superfamily protein (.1) Lus10010565 [exp] 160 / 2e-42 AT2G32040 721 / 0.0 Major facilitator superfamily protein (.1) Lus10006106 [exp] 158 / 2e-41 AT2G32040 721 / 0.0 Major facilitator superfamily protein (.1) Lus10037809 [exp] 105 / 8e-24 AT5G54860 630 / 0.0 Major facilitator superfamily protein (.1) Lus10024977 [exp] 82 / 3e-16 AT1G64890 508 / 2e-179 Major facilitator superfamily protein (.1) Lus10023708 [exp] 72 / 7e-13 AT1G04570 451 / 3e-154 Major facilitator superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G265500 [exp] 644 / 0 AT5G10820 620 / 0.0 Major facilitator superfamily protein (.1) Potri.018G017400 [exp] 635 / 0 AT5G10820 612 / 0.0 Major facilitator superfamily protein (.1) Potri.018G017100 [exp] 444 / 2e-151 AT5G25050 580 / 0.0 Major facilitator superfamily protein (.1) Potri.006G266000 [exp] 437 / 6e-149 AT5G25050 579 / 0.0 Major facilitator superfamily protein (.1) Potri.001G041600 [exp] 409 / 3e-138 AT1G79710 586 / 0.0 Major facilitator superfamily protein (.1) Potri.010G085900 [exp] 152 / 9e-40 AT2G32040 650 / 0.0 Major facilitator superfamily protein (.1) Potri.011G137300 [exp] 139 / 1e-35 AT5G54860 633 / 0.0 Major facilitator superfamily protein (.1) Potri.011G137400 [exp] 138 / 7e-35 AT5G54860 609 / 0.0 Major facilitator superfamily protein (.1) Potri.008G173600 [exp] 102 / 7e-23 AT1G04570 502 / 6e-174 Major facilitator superfamily protein (.1) Potri.010G063800 [exp] 99 / 9e-22 AT1G04570 523 / 0.0 Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF03092 [flax] [poplar] BT1 BT1 family
Representative CDS sequence Show only first row Show all	>Lus10026890 pacid=23142819 polypeptide=Lus10026890 locus=Lus10026890.g ID=Lus10026890.BGIv1.0 annot-version=v1.0 ATGGCGTCGACGTCGAATCCCCTCTCCCTGGAAACCGAGCAGCTCATCAAAAACCCTCCGCATCAAGAAGAACGCCGTACAAACCAAACAAAATCCCCAA ACAACAACATTACAAATCTCACCAGATCCTTTCTAATCTCGCCGTTCCAATGGCTACAAATGCTCTCATCAAATCTAAACCCGACATTCATCCTGGGGAT CTTCATCGTCTACGGCCTCAGCCAAGGATTCTCTGGCTCCTTCTTCAGAGTCGTCACCGACTACTACTGGAAAGACGTCCAGAAGCTCCAACCTTCCACG CTCCAGATCTACATGGGGTTCTACTACATCCCTTGGATTCTAAAGCCCCTGTGGGGCCTCTTCACCGACGTCTTCCCCATCGGCGGGTACAACCGGAGGC CGTACTTTGTGGCGGCGGGGGTTTTGGGCTCTGTTTCCGCTCTGGTGGTGGGTTTGACGGGGGCGGGGATGCCGGTGGCTGCTGCGATGAGTTGCTTGGT TGGTGTGACGGCCGGGATGGCGATTGCGGATGTGACGATTGATGCTTGTGTGGCGAGGAATAGCATAGAGAGGAAACATCTGAGTGCTGATATGCAGAGT CTTTGTGGGTTTTGTTCGTCAGTCGGTGCTTTGATTGGGTATTCTTCCAGTGGCATTTTCCTTAATCTGCTTGGACCCCAGGTGGCGTTGGTATTATTGG CGATCCCTCCGGCATTTGTGATGGTTTTGGGGTTTGTGATATACGAAGAAGTTGGGATTAATACTGGTCGGAAAGATGAGGAGGCGGAGGAGGCGATGAA CTCGAACACCAAGGCAGTCCTAGAAAACCTAGTAGTGGCAGTGAAAGAGACATGGCGAACAATACAGTATCCTCAAGTATGGAAGCCAACACTGTACATG TACCTCTCCTTAGCCCTCAGCATCAGCACCCATGAAGGCCAATTCTACTGGTACACCCATCCGAACCCTGACCCGACCAACAAACCGAACGGCCCAGCCT TCTCCCAAGCCTTCATCGGAATGATATACGCCGTCGGAGCCTTAGCATCCATTGTGGGCGTAGTCATCTATCAAAAAGCCCTCAAGAACATCCCTTTCCG TCCCTTGCTCTTCTCCGCACAGCTCCTGTACGGCCTCCTTGGGATGCTCGACGTGGCTTTCATCCTCCGGTGGAACCTTCACCTCGGGATTCCAGACTCC ATATTCGTGATGGTGGAAGAATGTGTGTCGAAGGTGGTGACAAGGATCCGGTGGACGCCCATGATTGTGCTGAGCACCAGGTACGAGACAGATGTGGGAG GTGGCTGGCCTAGGCTGTGTCCGGTGGGGATAGAAGGAACGTTCTTCGCGTTGTTGATGTGCATCGACAGCTTGGGCTCTCTGTCGTCCAAGTGGGCGGG CGGGGTGGTGCTCCACTTGTTTGGGGTGACCAGGACGAACTTCGACAACTTGTGGGCGGTGATTTTGTTGAGGAATGTGTTGCGGTTGGCGACTTTGGGT TTGATTTTTCTGGTTCCGGATGGAGATTTGACGGATGAGTTTGTTCCGACTTCGTTGGATGTTTTCGAAAAGAGTACTAGTAATAATGATGGAGCATTAG GAGATGATGGTGATGTCGATGGTGGGTTTTTACTTACGACGTTTATAGAGGATCATCAGGGTGCATGTAGCAAAGAACAACATACGTTAACTCCATCTTA A
AA sequence Show only first row Show all	>Lus10026890 pacid=23142819 polypeptide=Lus10026890 locus=Lus10026890.g ID=Lus10026890.BGIv1.0 annot-version=v1.0 MASTSNPLSLETEQLIKNPPHQEERRTNQTKSPNNNITNLTRSFLISPFQWLQMLSSNLNPTFILGIFIVYGLSQGFSGSFFRVVTDYYWKDVQKLQPST LQIYMGFYYIPWILKPLWGLFTDVFPIGGYNRRPYFVAAGVLGSVSALVVGLTGAGMPVAAAMSCLVGVTAGMAIADVTIDACVARNSIERKHLSADMQS LCGFCSSVGALIGYSSSGIFLNLLGPQVALVLLAIPPAFVMVLGFVIYEEVGINTGRKDEEAEEAMNSNTKAVLENLVVAVKETWRTIQYPQVWKPTLYM YLSLALSISTHEGQFYWYTHPNPDPTNKPNGPAFSQAFIGMIYAVGALASIVGVVIYQKALKNIPFRPLLFSAQLLYGLLGMLDVAFILRWNLHLGIPDS IFVMVEECVSKVVTRIRWTPMIVLSTRYETDVGGGWPRLCPVGIEGTFFALLMCIDSLGSLSSKWAGGVVLHLFGVTRTNFDNLWAVILLRNVLRLATLG LIFLVPDGDLTDEFVPTSLDVFEKSTSNNDGALGDDGDVDGGFLLTTFIEDHQGACSKEQHTLTPS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G10820			Major facilitator superfamily ...		Lus10026890 [exp]	0	1
AT1G02520		MDR8, ABCB11, P...	multi-drug resistance 8, ATP-b...		Lus10010067 [exp]	1.7	0.9507
AT3G52190		AtPHF1, PHF1	phosphate transporter traffic ...		Lus10037923 [exp]	2.0	0.9408
					Lus10005397 [exp]	2.4	0.9422
AT2G48010		RKF3	receptor-like kinase in in flo...		Lus10029626 [exp]	4.7	0.9331
AT3G19660			unknown protein		Lus10012438 [exp]	5.2	0.9369
AT4G15560		AtCLA1, DXS, DX...	1-DEOXY-D-XYLULOSE 5-PHOSPHATE...		Lus10019992 [exp]	5.3	0.9374
AT5G49690			UDP-Glycosyltransferase superf...		Lus10027850 [exp]	5.5	0.9397
AT5G15130	WRKY	ATWRKY72, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10023615 [exp]	7.1	0.9349
AT5G13110		G6PD2	glucose-6-phosphate dehydrogen...		Lus10003134 [exp]	7.5	0.9417
AT3G21820		SDG36, ATXR2	SET DOMAIN PROTEIN 36, histone...		Lus10015102 [exp]	11.0	0.9314

Compare expression of checked genes

Lus10026890 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.